PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g01600.1
Common NameLOC4326301, Os01g0105700, OSNPB_010105700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 389aa    MW: 41695.1 Da    PI: 8.4981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g01600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47e-052753131255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  LOC_Os01g01600.1 275 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 313
                       7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.528263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-11273325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-5273317No hitNo description
Gene3DG3DSA:4.10.280.108.6E-9277320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MMASSSSSSS LCDNHLLQDD LIPWPSMPFA PAPNTFGLNH QWSQPPMLSS STDQLSSYEL  60
ESLQSVESQL AAAAPPTLSP HLQAHQLSTV LMMQELGFQW SSCAAPADQH SIASSTNNNS  120
NVMMNEEELR PRPDQSLISN PRSCSATTLL PPPHLHLDGA VLPSINVSRL QKLAAGDEPL  180
QICCKRQAAA AAVVGHSSIR DEHVPCPYAG PPAHLIQGPS NTLQMKRNTN AAAQGRGGRH  240
GSSTEHRSST ALPPSSKKPR LESHSSSMLP SFKVRKEKLG DRIAALQQLV SPFGKTDTAS  300
VLMEAIGYIK FLQDQVETLS GPYLRSSKNS KKLACRAAQQ QRKGTSNGGD AAAKLDLRSR  360
GLCLVPLSCT SYVTNENGVW PPPNFRGN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.458590.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379891160.0
Expression AtlasQ0JRE3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g01600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g01600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194930.0AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627200.10.0uncharacterized protein LOC4326301
TrEMBLA0A0E0MQC10.0A0A0E0MQC1_ORYRU; Uncharacterized protein
TrEMBLQ0JRE30.0Q0JRE3_ORYSJ; Os01g0105700 protein
STRINGORUFI01G00370.10.0(Oryza rufipogon)
STRINGOS01T0105700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.16e-46bHLH family protein