PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g01470.1 | ||||||||
Common Name | LOC4326295, Os01g0104500, OsJ_00037, OSNPB_010104500, P0436E04.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 35726.6 Da PI: 6.7133 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.3 | 2.1e-55 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdee++++yL++kv +++ + +i evd++k+ePwdLp k+ ++ekewyf++++d+ky+tg r+nrat++gyWkatgkdke+ LOC_Os01g01470.1 14 LPPGFRFHPTDEEIITFYLAPKVVDSRGFCVAAIGEVDLNKCEPWDLPgKAKMNGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKEI 106 79********************99999556588***************544445788************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++ l+g+kktLvfykgrapkg kt+Wvmheyrl LOC_Os01g01470.1 107 FRDHHMLIGMKKTLVFYKGRAPKGDKTNWVMHEYRL 142 **9*******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-62 | 10 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.603 | 14 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-28 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MGEQQQQVER QPDLPPGFRF HPTDEEIITF YLAPKVVDSR GFCVAAIGEV DLNKCEPWDL 60 PGKAKMNGEK EWYFYCQKDR KYPTGMRTNR ATEAGYWKAT GKDKEIFRDH HMLIGMKKTL 120 VFYKGRAPKG DKTNWVMHEY RLADASPPPP PSSAEPPRQD DWAVCRIFHK SSGIKKPVPV 180 APHQVPAAAN YQQQQQMAMA SAGIIQVPMQ MQMPSMSDQL QMLDDFSTTA SLSLMAPPSY 240 STLPAGFPLQ INSGAHPQQF VGNPSMYYHQ QQQMDMAGGG FVVSEPSSLV VSPQDAADQN 300 NNAADISSMA CNMDAAIWKY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 1 | 176 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 1 | 176 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 1 | 176 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 1 | 176 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 1 | 176 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-52 | 1 | 176 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 1 | 176 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.13548 | 0.0 | panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q9FTY0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g01470.1 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g01470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242268 | 0.0 | AK242268.1 Oryza sativa Japonica Group cDNA, clone: J075186C19, full insert sequence. | |||
GenBank | GU120353 | 0.0 | GU120353.1 Oryza sativa Japonica Group clone KCS385F08 NAM protein mRNA, complete cds. | |||
GenBank | JN944365 | 0.0 | JN944365.1 Oryza sativa Japonica Group clone KCS263E06 NAM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621005.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FK44 | 1e-78 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | Q9FTY0 | 0.0 | Q9FTY0_ORYSJ; NAM protein | ||||
STRING | OS01T0104500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 2e-78 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g01470.1 |
Entrez Gene | 4326295 |
Publications ? help Back to Top | |||
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