PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g01290.1
Common NameOs01g0102400, OsJ_00019, OSNPB_010102400, P0402A09.22, P0455C04.16, P0672D08.43
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 422aa    MW: 46374.4 Da    PI: 4.782
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g01290.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC86.62.7e-2721121198
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       q+  fw ++   ie+++df +h++P+ar+kki  +++   m+s + P++lsk celf+ el++r+w  a++ +r  +  +dia+a+++t+ +d
  LOC_Os01g01290.1  21 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYD 113
                       68899*765566********************************************************************************* PP

             NF-YC  91 flvdivpr 98 
                       flvdi  +
  LOC_Os01g01290.1 114 FLVDILHN 121
                       ****9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001255.9E-924106IPR007125Histone H2A/H2B/H3
SuperFamilySSF471132.01E-1628120IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.0E-1945119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEQTLDVPRS LRLPTPKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIASSQKGNM  60
MMSFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DIAEAIASTE SYDFLVDILH  120
NHREKHKSTP CSTLTTKRCR LVDQPSTSRP PYQHQLPLFA PTYTPAIPIT PSLMPPISHY  180
IPFQYPSLSQ EVSTMMASAP IVNRSMLLIH NIARGLGLQG NNISTFANNN IPDNIIGCSS  240
PAVLASMMSP ALLDVAGASL NPPNSHSICT MNMINSSDPS GSSIGDINVA NQASLAPSEH  300
FNPAILQESS CPSFLYNNNN DTIVVVPEGV DISGTMDVAG LVINGQEEEH ERKTNVEQNE  360
IYESIDIGII NASVADGNKC SIRWDELGTA DDSLLDKFLE EFQARNDGVL HSGIVLHEDH  420
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-1831119593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.480260.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160115910.0
Expression AtlasQ93VF0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g01290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g01290
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422260.0AK242226.1 Oryza sativa Japonica Group cDNA, clone: J075175B02, full insert sequence.
GenBankAP0029690.0AP002969.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0455C04.
GenBankAP0036100.0AP003610.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0402A09.
GenBankAP0037270.0AP003727.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0672D08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622453.10.0uncharacterized protein LOC4326467 isoform X3
TrEMBLA0A2H4C0970.0A0A2H4C097_ORYSA; Nuclear factor Y transcription factor
TrEMBLA2WJM70.0A2WJM7_ORYSI; Uncharacterized protein
TrEMBLQ93VF00.0Q93VF0_ORYSJ; Os01g0102400 protein
STRINGOS01T0102400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Representative plantOGRP1164537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.26e-23nuclear factor Y, subunit C4