PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA040507-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Dof
Protein Properties Length: 319aa    MW: 31618.5 Da    PI: 9.9464
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA040507-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.43.3e-383593260
            zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      +e  lkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalrnvPvGgg r+nk+
  BGIOSGA040507-PA 35 PEPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGFRRNKR 93
                      56789****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-362593IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3483993IPR003851Zinc finger, Dof-type
PfamPF027012.7E-323993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAAAGILPVS GGGGASSARP ASMAERARMA KIPQPEPGLK CPRCDSTNTK FCYFNNYSLT  60
QPRHFCKACR RYWTRGGALR NVPVGGGFRR NKRGTKPSNS KKPAAAVAGG VMAPPHAQLQ  120
LPFGFDGGGG GGGHGSIIGG GGGGGASRLG FPELSSLHAA AAVDYQLGGG GGGDGLGLER  180
QRLPHFPFLA RSNAAVHPLP LMSTAAGISY PFGDVAAGGL GGDMPANAAS VAGSAGLITQ  240
MASVKMDDID NHPPPSAATT TASSPIEFLG LRGSLQFWGG GGGHRDGGDG AGGSAAPGGG  300
GGGWSDLPAF DLSTSGNIL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.352040.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329785590.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685420.0AK068542.1 Oryza sativa Japonica Group cDNA clone:J013155H18, full insert sequence.
GenBankAP0043030.0AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645541.11e-174dof zinc finger protein DOF5.1 isoform X3
TrEMBLA0A0E0HYG50.0A0A0E0HYG5_ORYNI; Uncharacterized protein
STRINGONIVA07G06830.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.15e-42OBF-binding protein 3