PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA038947-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 239aa    MW: 25556.8 Da    PI: 6.4936
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA038947-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.4e-40631621100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCkvlrr+Ca++Cvlapyfp ++p kf  +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq++ ++lk++
  BGIOSGA038947-PA  63 PCAACKVLRRRCADGCVLAPYFPPTEPTKFTTAHRVFGASNIIKLLQELPESARADAVSSMVYEAEARLRDPVYGCAGAVCRLQKEANELKVQ 155
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++ 
  BGIOSGA038947-PA 156 LARAQAD 162
                       **99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.27462163IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-4063160IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDHAGNTVAN VTVAQQPHYG RSVSPPSRVS SCSPPPPPVG TASLLVGNTS SSSSPTTTVV  60
LSPCAACKVL RRRCADGCVL APYFPPTEPT KFTTAHRVFG ASNIIKLLQE LPESARADAV  120
SSMVYEAEAR LRDPVYGCAG AVCRLQKEAN ELKVQLARAQ ADLLNARAQH DNLVALVCVE  180
LAHRRRDDDQ QLEYQAPAPP LPHPAEYCSG GAGFGATVYQ PFYDSDLDSA AWGEPQLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-42531651113LOB family transfactor Ramosa2.1
5ly0_B6e-42531651113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.534140.0flower| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166323390.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0725150.0AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629326.11e-176LOB domain-containing protein 1
SwissprotQ9LQR02e-60LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A0E0GKZ61e-175A0A0E0GKZ6_ORYNI; Uncharacterized protein
TrEMBLI1PA851e-175I1PA85_ORYGL; Uncharacterized protein
TrEMBLQ10N091e-175Q10N09_ORYSJ; LOB domain protein 1, putative, expressed
STRINGOS03T0287400-011e-175(Oryza sativa)
STRINGONIVA03G14510.11e-175(Oryza nivara)
STRINGORGLA03G0128100.11e-175(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-59LOB domain-containing protein 1