PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA038168-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 327aa    MW: 36073.8 Da    PI: 10.4467
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA038168-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57336.71.2e-11115208297
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafy.efvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                       +f+r ws  De+++L ++++ ++++g  +  d+++++   +++s++  ++    l +K+ +LK+ + + +     ++ p+   ++ +  f+l+
  BGIOSGA038168-PA 115 AFERSWSRADELTILEAMVNHANTHG-GALPDTSDLFaALASSSLDrRDADLPKLADKVHKLKRWYDNARLP---QRCPTDVDDDTRRLFQLC 203
                       699******************99999.556666665505566677525788899**************9998...6777778888999***** PP

            DUF573  93 kkiWg 97 
                        k+Wg
  BGIOSGA038168-PA 204 GKVWG 208
                       ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.9E-16116208IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSSWWSWRSL FSSLANANGG GSNADASSGS GTSSPLVHEA QQAAARRRSA RTKKPPEEEA  60
AGSQPQPKTR PSPASKASKA KALLQLGDGE PKKKPAPTPT PTQKRSNKRK RVAPAFERSW  120
SRADELTILE AMVNHANTHG GALPDTSDLF AALASSSLDR RDADLPKLAD KVHKLKRWYD  180
NARLPQRCPT DVDDDTRRLF QLCGKVWGPP STVLRTSPRQ RHKVVGVLVQ GNGANPQQAA  240
APKVKEKRVR RELSELYVLY PSLAQEVKAH ANEYGELIGT AFQFIGDDEA RCYDDRYRKM  300
LVDKLNMKKE HADLTRSLLC TLAGYIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191110KKKPAPTPTPTQKRSNKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.975750.0panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060580.0AP006058.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0066B16.
GenBankAP0060610.0AP006061.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0414D03.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611454.10.0uncharacterized protein LOC9269165
TrEMBLA0A0E0IG000.0A0A0E0IG00_ORYNI; Uncharacterized protein
STRINGONIVA09G00100.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162861010