PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037742-PA
Common NameOsI_39004
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 298aa    MW: 31904.2 Da    PI: 5.4719
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037742-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.41.2e-16116171459
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                        kr+rr+ +NRe+ArrsR+RK+a +  Le  v +L +eN +L+k+l+ +++++++ 
  BGIOSGA037742-PA 116 AKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQS 171
                       69*****************************************7777777776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-18109177IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.047115178IPR004827Basic-leucine zipper domain
PfamPF001707.1E-14116170IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-12117169No hitNo description
Gene3DG3DSA:1.20.5.1708.3E-14117170No hitNo description
CDDcd147021.11E-18118168No hitNo description
PROSITE patternPS000360120135IPR004827Basic-leucine zipper domain
PfamPF124982.0E-12184232IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKRGGAGVGG GGGGGGDPGA YAAVLKTKLD LYCAAVAKSM EAKLQESSLG YLNLQASDTS  60
QLVSQDSFNG YGSTRVTNSN AIHEDDDQGK PANSGTSKEQ SDDDGDLEED TDPVNAKRTR  120
RMLSNRESAR RSRKRKQAHL NDLESQVSQL RSENASLQKR LSDMTQKYKQ STTEYGNLQD  180
DMNAMRRKVN IAEEAVRRVT GIGLQLFTTS EVPASSMPFS SGVSDAASAA LVEDDWTNCS  240
LPDEAIPVPS AAMALRSPSV RRVASLENLQ KRIHAGDVTH FEAASALSLP EATACDNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135RRSRKRK
2129136RRSRKRKQ
3131136SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.264371e-160leaf| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977293721e-160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4056940.0CU405694.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620821.10.0light-inducible protein CPRF2 isoform X2
TrEMBLA2ZMF40.0A2ZMF4_ORYSI; Uncharacterized protein
STRINGORUFI12G20050.10.0(Oryza rufipogon)
STRINGONIVA12G16860.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-24bZIP family protein