PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA037734-PA | ||||||||
Common Name | OsI_38990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 379aa MW: 39353.5 Da PI: 8.2263 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.2 | 3.6e-14 | 199 | 246 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ahn E+rRR +i ++f +L++l+P + + K + a++L ++++Y+ksLq BGIOSGA037734-PA 199 AHNLTEKRRRFKITERFRTLQRLVPGC----DNKSNQASTLDQTIQYMKSLQ 246 8*************************9....89******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.2E-17 | 194 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.037 | 195 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-17 | 199 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.37E-14 | 199 | 250 | No hit | No description |
Pfam | PF00010 | 7.0E-12 | 199 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-13 | 201 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MDRQDTEAAG SFTGDDSGQT AAIAAAAAAA VENDDLSYML RGFDYYTSSE DLFELMRQGG 60 GGACSFNQPP PLLPPAGIIV PGTTTTTLLP EQPVVDDHLP AAAAAPPSEE EMAAWLYPIV 120 GGHQVAAGGW LSPEAGDDRR AAPPAPEKKQ MDNMPAVASP TTTMNKDEAS DDSGERKKKK 180 KKASSAAGKA SRHRHAAGAH NLTEKRRRFK ITERFRTLQR LVPGCDNKSN QASTLDQTIQ 240 YMKSLQHQLE ATSAVGSPAA AVLYPAAVHP QSYMHPPAPP PPVAGAAAPV TMAPMPAGMV 300 LAAAPPGAAP PPGPPATMMP FGAMLPYPPY PAVLLPPPPA TLYGRPPAAA PSVAARRHGS 360 TSGGGRISKS SSSSLRKEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 180 | ERKKKKK |
2 | 175 | 181 | RKKKKKK |
3 | 203 | 208 | EKRRRF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.69800 | 2e-97 | callus| flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297729364 | 2e-97 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619315.1 | 1e-147 | transcription factor APG | ||||
TrEMBL | B8BMU7 | 0.0 | B8BMU7_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI12G19880.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 5e-12 | phytochrome interacting factor 3 |