PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037400-PA
Common NameOsI_38343
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRF
Protein Properties Length: 459aa    MW: 48908.7 Da    PI: 8.6723
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037400-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC741.6e-23156200145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  BGIOSGA037400-PA 156 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 200
                       689***************************************986 PP
2QLQ58.52.1e-2085121137
               QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       ++FT++Q+++L++Q+l+yK+++an+PvP+ Ll++i++
  BGIOSGA037400-PA  85 GPFTPTQWMELEHQALIYKHIVANAPVPAGLLLPIRR 121
                       59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-1185121IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.83686121IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.5E-1586120IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.527156200IPR014977WRC domain
PfamPF088791.0E-19158199IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MATPTTNGSF LLGSGGYPGA QILSFSSSGH SGNEMCPLSP KMQSLLNPLE MALTLFTLPS  60
SSERGLDCGS SDVARMQGVL ARVRGPFTPT QWMELEHQAL IYKHIVANAP VPAGLLLPIR  120
RSLHPPVFPH FSSGGILGSS SLGWGSFQLG YSGSADSEPG RCRRTDGKKW RCSRDAVVDQ  180
KYCERHINRG RHRSRKHVEG QSSHAAKATV PAIAQPPIGA SNGKLSGSHG VSNELTKTLA  240
TNRMMLDKAN LIERSQDYTN QQHNILQNNT KGDNWSEEMS SQADYAVIPA GSLMNTPQSA  300
NLNPIPQQQR CKQSLFGKGI QHDDIQLSIS IPVDNSDLPT NYNKAQMDHV VGGSSNGGNN  360
TRASWIPGSW EASIGGPLGE FFTNTSSASD DKGKSRHPPS LNLLADGHTT SPQLQSPTGV  420
LQMTSFSSVP SSTVSSPAGS LCNGLLTSGL VNAQTVQTL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.767220.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977291840.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2415570.0AK241557.1 Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618985.10.0growth-regulating factor 7 isoform X2
SwissprotQ6AWY20.0GRF7_ORYSJ; Growth-regulating factor 7
TrEMBLA2ZKJ30.0A2ZKJ3_ORYSI; Uncharacterized protein
STRINGOS12T0484900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-43growth-regulating factor 2