PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA037085-PA | ||||||||
Common Name | OsI_37656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 24159.9 Da PI: 8.045 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.3 | 4.2e-19 | 26 | 70 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++ BGIOSGA037085-PA 26 RGNFTDEEDELIIKLHELLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 70 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.159 | 1 | 20 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.68E-23 | 7 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-12 | 7 | 33 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 29.116 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-18 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-17 | 26 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.34E-14 | 28 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-25 | 34 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVIGLLRCGK SCRLRWINYL RPDLKRGNFT DEEDELIIKL HELLGNKWSL IAGRLPGRTD 60 NEIKNYWNTH IKRKLLARGL DPLTHRPLNA AAAVAGHHHL AAGGSSCSPD ATSGHSSCSD 120 GDEYRGGIDL NLSISPPSSS SQPSSPPPPP PHEAEARRAG ATASYTYHHH YSETREKICL 180 CLNHLGLHGG DECSCGGSSA SSSSSPPPAT ASSRAFTFAN ASSSTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-22 | 7 | 75 | 40 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51540 | 0.0 | callus| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297728898 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063027 | 0.0 | AK063027.1 Oryza sativa Japonica Group cDNA clone:001-110-B12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618922.1 | 1e-120 | myb-related protein 308 | ||||
Swissprot | P81393 | 2e-55 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A2ZIK8 | 1e-163 | A2ZIK8_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI12G05190.1 | 1e-120 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-53 | myb domain protein 4 |
Publications ? help Back to Top | |||
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