PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA037065-PA | ||||||||
Common Name | OsI_37625 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 478aa MW: 51788.8 Da PI: 5.2458 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.8 | 5e-07 | 234 | 255 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H BGIOSGA037065-PA 234 FCGICGKGFKRDANLRMHMRGH 255 6*******************98 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 320 | 343 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C+ Cg k+Fs +Lk+H + + BGIOSGA037065-PA 320 HVCGRCGaKRFSVMADLKTHEKHC 343 79******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.9E-5 | 231 | 258 | No hit | No description |
SMART | SM00355 | 0.0091 | 233 | 255 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.759 | 233 | 260 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 234 | 259 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 235 | 255 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 89 | 282 | 315 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 47 | 320 | 342 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MDRDQMMNTM RDQAANLTSM NPLFYPFMAD DALLGMAPPP PQQLLPSVSI QHMDWSPDTM 60 LDNLTFIEEK IRQVKDVIRS MAGRRASSSS AATPEQQLVN ADLTCLIVQL ISTAGSLLPS 120 LKNSSFLSRT TPPPAAAAGA AQAVSLAAGE SSSSARNNET NREDEEEMGS PDYDELFKGW 180 TNGGAMDEFV GAAGDEQDAR ENPAAAAAAA EEEEEKYEVL QLEEDEILAP HTHFCGICGK 240 GFKRDANLRM HMRGHGDEYK SAAALAKPPP PPEGEEQPER RYSCPHAGCK RNRMHASFQP 300 LKTILCVKNH YKRSHCEKRH VCGRCGAKRF SVMADLKTHE KHCGRDRWLC SCGTTFSRKD 360 KLFAHVALFQ GHAPALPPPP PPPPTTTTST AASGRRRHKQ EETEFTWGGG GGGDEFLDVK 420 GIAGVGSGSG GGDEFFSAGS FGAMDFGFGQ LDASLAMLLP SESEQFAGDH QEENGDDK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50556 | 0.0 | callus| flower| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37991449 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:19880795}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269|PubMed:19880795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620753.1 | 0.0 | zinc finger protein STAR3 | ||||
Swissprot | Q2QX40 | 0.0 | ART1_ORYSJ; Zinc finger protein STAR3 | ||||
TrEMBL | A2ZIH7 | 0.0 | A2ZIH7_ORYSI; ART1 | ||||
STRING | ONIVA12G03970.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 9e-78 | C2H2 family protein |