PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036958-PA
Common NameOsI_37402
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 554aa    MW: 60848.7 Da    PI: 5.3475
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036958-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.62.5e-1001675461373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l+elL++cA+av+sg+ + a +lL++++ ++sp+gd+++Rla+yf+ +L+arla+   +l + l +s++++ +  e l a+++f  ++ +  +
  BGIOSGA036958-PA 167 LRELLMSCAQAVASGNRRSAGELLEQIKRHSSPTGDATERLAHYFADGLEARLAG-AASLEHRLLASAEERASAMELLEAYQVFMAACCFKWV 258
                       689***************************************************9.88999999999999999******************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                       ++  aN aIl+a+eg ++vHi+D++ + +GlQWp+Llq La+R++gpp++R+T vg+p++g   +++le+tg+rL++ A+++g+pf+f++++a
  BGIOSGA036958-PA 259 AFTFANMAILRAAEGRSKVHIVDYGGQyHGLQWPSLLQRLAEREGGPPEVRMTLVGHPQPGfrPARRLERTGRRLSNCARAFGLPFKFRAVAA 351
                       ************************86538*************************************************************999 PP

              GRAS 184 krledleleeL.rvkpgE.alaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                        r+e+++ e+   v+++E a++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v +  +  h+++ F +rf eal ++salfd+l+
  BGIOSGA036958-PA 352 ARWETVTAEDVvGVDHDEaAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLD 444
                       9*******99757888773699**************98877779************************************************9 PP

              GRAS 273 aklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                       a+ p+e  + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++v+++ ++++ +++ +r+ + +++ +ee+ g+l++gWk+
  BGIOSGA036958-PA 445 ATTPEEGsHLRAVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRAGLRQVAVEADVVEAVRRRVRRRHHEEFVIEEDAGWLLQGWKG 537
                       9988876599****************************************************************999**************** PP

              GRAS 365 rpLvsvSaW 373
                       r L++ SaW
  BGIOSGA036958-PA 538 RILYAHSAW 546
                       ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.858141527IPR005202Transcription factor GRAS
PfamPF035148.6E-98167546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGPAAPPSEA AAAADDVVLP YISRILMEED IDDDMFFCLY PDHPALLEAQ QPFAQILSSS  60
SGIAGEVNSA PMEDSAALMM QGSGNGRGRK GSKHGGDELE AEVGRASKLM ATPEEEEDDD  120
DGVGEMLEKM MLNGDEEMNA PRVPAEKNGG KAARRKRRQG KGEVVDLREL LMSCAQAVAS  180
GNRRSAGELL EQIKRHSSPT GDATERLAHY FADGLEARLA GAASLEHRLL ASAEERASAM  240
ELLEAYQVFM AACCFKWVAF TFANMAILRA AEGRSKVHIV DYGGQYHGLQ WPSLLQRLAE  300
REGGPPEVRM TLVGHPQPGF RPARRLERTG RRLSNCARAF GLPFKFRAVA AARWETVTAE  360
DVVGVDHDEA AVVVNDVLSL GTLMDESGVF DDPSPRDTVL GSIRDMRPAV FVQAVVNGAH  420
GAPFFPTRFR EALFFFSALF DMLDATTPEE GSHLRAVLER DVLRRAAVGV IAGEGAERVE  480
RPETYRRWQA RNRRAGLRQV AVEADVVEAV RRRVRRRHHE EFVIEEDAGW LLQGWKGRIL  540
YAHSAWVVAE DGAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3717454726379Protein SCARECROW
5b3h_A9e-3817454725378Protein SCARECROW
5b3h_D9e-3817454725378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.535170.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329921100.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLB8BLY70.0B8BLY7_ORYSI; Uncharacterized protein
STRINGORGLA12G0020400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.13e-95SCARECROW-like 14