PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036871-PA
Common NameOsI_37200
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 453aa    MW: 45840.7 Da    PI: 5.5217
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036871-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023118140123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +C k F ++     H+r+H
  BGIOSGA036871-PA 118 FACRICRKEFDTRKAVDGHMRVH 140
                       78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.069117143IPR007087Zinc finger, C2H2
SuperFamilySSF576672.45E-5117140No hitNo description
PROSITE profilePS5015710.325118145IPR007087Zinc finger, C2H2
SMARTSM003550.01118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576672.45E-5219248No hitNo description
Gene3DG3DSA:3.30.160.604.8E-4223237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.39224253IPR007087Zinc finger, C2H2
SMARTSM003550.75224248IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226248IPR007087Zinc finger, C2H2
PROSITE profilePS501578.954281308IPR007087Zinc finger, C2H2
PfamPF139120.0016281304IPR007087Zinc finger, C2H2
SMARTSM003556.3281303IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280283303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEGGNSSKGA MEGGHRCRRP NVDDDDQIEE GEICYDCHVS ASETDDDDEH HRRAVLPPRD  60
NGDGCAEHKR CRLDNAATAP APSAGSVLTT SNGSAIVAIA SAAAAAAAAA STVAREVFAC  120
RICRKEFDTR KAVDGHMRVH RQQSIATPKY NAADNSRVTV VAEPRTDLDL SGPHGSSSAP  180
PSPPAPPANP PNHNQAVGHQ PAAAAPNAGV VVVVEGAPQK SLPYMCKMQG CGRAFPTHQG  240
LGGHAAGHQN RSKAAAAAAS EQGSSGAGAD GCHGGADSSK HRCRECGMEW KTGFALGGHM  300
RKHQTKEKVT VNEKEPNVAG SHISLGPPPS PELTPAAAEV TSTEPLDQPP LLSMVVGAEV  360
AAPALLALAN DAAALPPQDD RAEEEAAAEA AAPAEAAALP PVESGAEAAD VGAAPAAPLL  420
APIAGMGTVR IFGFLVEKPA PGDGSGGEGS APA
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329961230.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453670.0AC145367.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence.
GenBankAK1109140.0AK110914.1 Oryza sativa Japonica Group cDNA clone:002-173-C05, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616778.10.0myristoylated alanine-rich C-kinase substrate
TrEMBLA2ZHD10.0A2ZHD1_ORYSI; Uncharacterized protein
STRINGONIVA11G11690.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171081012