PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036870-PA
Common NameOsI_37199
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 431aa    MW: 44257 Da    PI: 5.5283
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036870-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002297119123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +C k F ++     H+r+H
  BGIOSGA036870-PA  97 FACRICRKEFDTRKAVDGHMRVH 119
                       78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.42E-696119No hitNo description
PfamPF139120.06596122IPR007087Zinc finger, C2H2
SMARTSM003550.0197119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.32597124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-4201215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.39202231IPR007087Zinc finger, C2H2
SMARTSM003550.75202226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204226IPR007087Zinc finger, C2H2
SuperFamilySSF576672.42E-6254281No hitNo description
PfamPF139120.0015259282IPR007087Zinc finger, C2H2
SMARTSM003556.3259281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974259286IPR007087Zinc finger, C2H2
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEGGNSSKGA MEGGHRCRRP NVDDDDQIEE GEICYDCHVS GSETDDDEHH RRAVLPPRDN  60
GDGCAEHKRC RLDNAATAPA PSAGPQLRAS TMAREVFACR ICRKEFDTRK AVDGHMRVHR  120
QQSIATPKYN AADNSRVTVV AEPRTDLDLS GPHGSSSAPP SPPAPANPPN HNQAVGHQPA  180
AAAPNAGVVV VVEGAPQKSL PYMCKMQGCG RAFPTHQGLG GHAAGHQNRS KAAAAAASEQ  240
GSSGAGADGC HGGADSSKHR CRECGMEWKT GFALGGHMRK HQTKETVTVN EKEPNVAGKH  300
ISLGPPPLPD LTPAAAEVTS SEPLDQPPLL SMVVGAEVAA PALLALANEA AALPPQDDQA  360
EEEAAAEAAA PAEAAALRPV EAGAEAADVG AAPEEPLLAP IAGMGTVRIF GFLVEKPAPG  420
DGSGGEGSAP A
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329961230.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453670.0AC145367.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence.
GenBankAK1109140.0AK110914.1 Oryza sativa Japonica Group cDNA clone:002-173-C05, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616778.10.0myristoylated alanine-rich C-kinase substrate
TrEMBLB8BNW00.0B8BNW0_ORYSI; Uncharacterized protein
STRINGOS11T0442900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171081012