PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA036541-PA | ||||||||
Common Name | OsI_37654 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 378aa MW: 42927 Da PI: 5.9956 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.9e-17 | 131 | 177 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +lv++v+q+G + W++I +++ gR +kqc++rw+++l BGIOSGA036541-PA 131 KGHWTVEEDRKLVKLVEQFGLKKWSLIGGMLP-GRVGKQCRERWFNHL 177 789*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 183 | 225 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+ BGIOSGA036541-PA 183 KDTWSEEEDMVLIQIHKEVGNR-WAEIAKRLP-GRTENSIKNHWN 225 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.07 | 126 | 181 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-31 | 129 | 224 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-15 | 130 | 179 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-27 | 132 | 184 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.04E-14 | 134 | 177 | No hit | No description |
Pfam | PF13921 | 1.3E-17 | 134 | 191 | No hit | No description |
SMART | SM00717 | 9.0E-17 | 182 | 230 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20 | 182 | 232 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 185 | 230 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.88E-13 | 185 | 228 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MDFSCFNPQP AISHGIPFDS FLLQDELHHH ADLDHPFEAE GITVHGSELE GGSVLPFATL 60 HDLDHEFFRR GSRKDFIDNA SSIFLLNPKT EVSHLVRDVQ VGAFGAYEMN GRLISRNKTS 120 RKGIKKADAV KGHWTVEEDR KLVKLVEQFG LKKWSLIGGM LPGRVGKQCR ERWFNHLRPN 180 IKKDTWSEEE DMVLIQIHKE VGNRWAEIAK RLPGRTENSI KNHWNATKRR QFARRRNRST 240 SKSGSTVLQN YIKSLAISPQ ESQMNNERSE SNPSDMMITQ GTPCCFDGNN CSQSHTSEEN 300 IVPSCGDFAA EMWSGLFDTK EDEEDEAQYL LYDMDTHVDM NCIFSNMDYG SNIEPGLASV 360 VKAECSAESW AVNLKETD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-44 | 130 | 231 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-44 | 130 | 231 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619155.1 | 0.0 | transcription factor MYB98 | ||||
TrEMBL | A2ZIK7 | 0.0 | A2ZIK7_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM12G05330.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OBART12G04480.1 | 0.0 | (Oryza barthii) | ||||
STRING | OBART12G04500.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-64 | myb domain protein 98 |