PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA036408-PA

Common Name

OsI_37916

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 949aa MW: 103513 Da PI: 4.758

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA036408-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.6e-17	56	103	1	48
TSSS-HH.HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTte.EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+e Ed+++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l BGIOSGA036408-PA 56 KGNWTPEeEDDIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 103 7998725789*****************.***********97 PP
2	Myb_DNA-binding	47.3	4.8e-15	109	151	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ BGIOSGA036408-PA 109 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 151 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.994	51	107	IPR017930	Myb domain
SuperFamily	SSF46689	7.86E-28	54	150	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-14	55	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-24	57	111	IPR009057	Homeodomain-like
CDD	cd00167	9.38E-14	58	103	No hit	No description
Pfam	PF13921	2.4E-15	59	120	No hit	No description
PROSITE profile	PS51294	19.654	108	158	IPR017930	Myb domain
SMART	SM00717	4.4E-14	108	156	IPR001005	SANT/Myb domain
CDD	cd00167	6.67E-11	111	151	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-21	112	158	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence Send to blast
MAIGVMMTSD NGKAPEKGGE ASGPSSAPQE GEISNEPQRR RPLSGRTTGP TRRSTKGNWT 60 PEEEDDIIVQ MVNKLGPKKW STIAQALPGR IGKQCRERWH NHLNPGINKE AWTQEEEITL 120 IHAHRMYGNK WAELTKFLPG RTDNAIKNHW NSSVKKKVDS YMSSGLLTQV SCLPLNEYSA 180 HCNSSPALTQ QNSEDSGSYA VREVENSSVC SQSSLAKVSC SQVHNANVAL GCDLQVNANV 240 DNNEAHDSQS SVGHEACYTS VGAVATAIPE VHYHVSSSNF DPDQHLQEEF AQGLNLHMSM 300 DEVPSNSSFA DNPTICSIEN HERSLEPYDV AMEMPLSMLP SDSGAEQKLH FMSEADFNSP 360 NCLKSELWQD ISLQSLLSGP DAVETDSFSR SNHQSDVYSS QADNEFLAPP YLLQTSNSSS 420 VMEATYGQSP QMSVPPSLIC SNVMTDVPSD NRSEPKEMTV SQAEMVTQSS SSSGDAEMSA 480 NPVSSNGSDI PSMMERIPEC ADQHVTNAEE PEASIEKEPS VTPSATADEK QDEGALFYEP 540 PRFPSMDVPF VSCDLVTSGD LQEYSPLGIR QLMRSTMNVC TPMRLWGSPT HDESPDILLK 600 SAAKSFICTP SILKKRHRDL VSPIPDKRIE KKSGTEKDCG VSDTSSIGIQ TCFINATKDD 660 AVITKSVLRI ERSASSKPLE KKLEFSDENK ENLDNTIEQA KDGQSAGNYK HIDEQARGER 720 RTATNITTTY DDLPGNLQPA GILIEHNGDD LVSPDYGKNT MKQKQNTNME SLSVCKEGVS 780 AKKPAELIVE KSSACINVDY EYVNILADTP GIKRGLESPS AWKSPWFVDM QFQGSYFVSP 840 ANGSYDALGL VKQINVQTAA ALAEAREVLA SGGQSENINS DKENLENPDA KKEPGATTKL 900 QAKIKTEGKI LDFNECATPI RSSDKKAGSS LGRSLSSPIP SSHLLKSFR

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence Send to blast

MAIGVMMTSD NGKAPEKGGE ASGPSSAPQE GEISNEPQRR RPLSGRTTGP TRRSTKGNWT  60
PEEEDDIIVQ MVNKLGPKKW STIAQALPGR IGKQCRERWH NHLNPGINKE AWTQEEEITL  120
IHAHRMYGNK WAELTKFLPG RTDNAIKNHW NSSVKKKVDS YMSSGLLTQV SCLPLNEYSA  180
HCNSSPALTQ QNSEDSGSYA VREVENSSVC SQSSLAKVSC SQVHNANVAL GCDLQVNANV  240
DNNEAHDSQS SVGHEACYTS VGAVATAIPE VHYHVSSSNF DPDQHLQEEF AQGLNLHMSM  300
DEVPSNSSFA DNPTICSIEN HERSLEPYDV AMEMPLSMLP SDSGAEQKLH FMSEADFNSP  360
NCLKSELWQD ISLQSLLSGP DAVETDSFSR SNHQSDVYSS QADNEFLAPP YLLQTSNSSS  420
VMEATYGQSP QMSVPPSLIC SNVMTDVPSD NRSEPKEMTV SQAEMVTQSS SSSGDAEMSA  480
NPVSSNGSDI PSMMERIPEC ADQHVTNAEE PEASIEKEPS VTPSATADEK QDEGALFYEP  540
PRFPSMDVPF VSCDLVTSGD LQEYSPLGIR QLMRSTMNVC TPMRLWGSPT HDESPDILLK  600
SAAKSFICTP SILKKRHRDL VSPIPDKRIE KKSGTEKDCG VSDTSSIGIQ TCFINATKDD  660
AVITKSVLRI ERSASSKPLE KKLEFSDENK ENLDNTIEQA KDGQSAGNYK HIDEQARGER  720
RTATNITTTY DDLPGNLQPA GILIEHNGDD LVSPDYGKNT MKQKQNTNME SLSVCKEGVS  780
AKKPAELIVE KSSACINVDY EYVNILADTP GIKRGLESPS AWKSPWFVDM QFQGSYFVSP  840
ANGSYDALGL VKQINVQTAA ALAEAREVLA SGGQSENINS DKENLENPDA KKEPGATTKL  900
QAKIKTEGKI LDFNECATPI RSSDKKAGSS LGRSLSSPIP SSHLLKSFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-42	56	158	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-42	56	158	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.23747	0.0	callus\| panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	56382759	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ430051	0.0	AJ430051.1 Oryza sativa mRNA for transcription factor myb (myb3R1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878027.1	0.0	LOW QUALITY PROTEIN: transcription factor MYB3R-4-like
TrEMBL	A2ZJB6	0.0	A2ZJB6_ORYSI; Uncharacterized protein
STRING	ORUFI12G07840.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2495	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	4e-63	myb domain protein 3r-4