PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036378-PA
Common NameOsI_37978
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 529aa    MW: 57350.2 Da    PI: 6.5588
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036378-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-09109134126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C ++ ++G C++G +CkF+H+
  BGIOSGA036378-PA 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134
                       5789*********************8 PP
2zf-CCCH25.91.8e-08240262325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       +e+C++++  G Ck+G  Ck+ H
  BGIOSGA036378-PA 240 QEECKYYSTPGGCKFGKACKYLH 262
                       699******************** PP
3zf-CCCH34.63.3e-11287311226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++++C++++rtG Cky  +CkF+H+
  BGIOSGA036378-PA 287 GEKECPYYMRTGSCKYATNCKFHHP 311
                       7899********************9 PP
4zf-CCCH19.91.3e-06434460127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C++f ++G+Ck+  +Ck++H++
  BGIOSGA036378-PA 434 PGQPECQHFVKSGFCKFRMKCKYHHPR 460
                       5789*********************96 PP
5zf-CCCH23.78.3e-08479504227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C ++ r+G Ck+G+ C ++H++
  BGIOSGA036378-PA 479 DQPVCTYYGRYGVCKFGPACAYNHPF 504
                       6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258108136IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6110134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103237265IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4238264IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6240262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4243263IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5285312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793285313IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8287311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6288312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4291310IPR000571Zinc finger, CCCH-type
SMARTSM003560.028433460IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676433461IPR000571Zinc finger, CCCH-type
SMARTSM003560.0081477504IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732477505IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5478505IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5479504IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV ELEEQLAGLA IADQGEELLL  60
PKPTGWEDGP VVVAGDEVSG GEKLPGEVAS AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF  120
GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNSSSNK ASSPDDEQQA PKEEYGSYVP  180
DISPEVDSLG FADKGSASNL ENFKKYSYEI IDVKKGRVEP KELKVAKEKR KEFISEGSSQ  240
EECKYYSTPG GCKFGKACKY LHRDGKEGKT DAEKVDLNFL GLPLRPGEKE CPYYMRTGSC  300
KYATNCKFHH PDPSNVASKD PQLEHENGDA PQQDVQGSSS QPNASIWPDQ RTVNEHHLPF  360
IAPSPSYSAG MLPPQGMYPP PEWNGYHQVP LNPYYPPGVP FQHFPAAPIN HPMYKAPEIP  420
GHQQVPSEEY PERPGQPECQ HFVKSGFCKF RMKCKYHHPR SPVPPAGALS PLGLPIKPDQ  480
PVCTYYGRYG VCKFGPACAY NHPFNFSPVP AAGPPLLPAQ YPTPGNYTL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.143120.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154881630.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119620.0AK111962.1 Oryza sativa Japonica Group cDNA clone:001-032-B06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620302.10.0zinc finger CCCH domain-containing protein 65 isoform X3
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLB8BP400.0B8BP40_ORYSI; Uncharacterized protein
STRINGOS12T0278800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-58C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]