PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036199-PA
Common NameOsI_38317
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 840aa    MW: 93192.5 Da    PI: 7.2404
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036199-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.96.7e-22128248199
                       EEEE-..-HHHHTT-EE--HHH.HTT..........................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........................ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                       f+k+lt sd++++g +++ +++a+e+                          +  ++ +++l+ +d++g +W++++i+r++++r++l++GW+ 
  BGIOSGA036199-PA 128 FCKTLTASDTSTHGGFSVLRRHADEClpplysffdrlivampltslldqdmsQ--HPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSV 218
                       99***********************************************9544..445569******************************** PP

                       HHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  68 FvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       Fv+a++L +gD ++F   + +++el+v+v+r+
  BGIOSGA036199-PA 219 FVSAKRLVAGDAFIFL--RGENGELRVGVRRA 248
                       ****************..449999*****996 PP
2Auxin_resp111.86.9e-37273355183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++t+++F+v+Y+Pr+s+seFvv+++ ++++lk++ s+GmRfkm fe+e+++e+r++Gt+vgv d+dp+ W +SkWrsLk
  BGIOSGA036199-PA 273 AWHAVNTGTMFTVYYKPRTSPSEFVVPRDLYKESLKRNHSIGMRFKMTFEGEEAAEQRFTGTIVGVGDSDPSGWADSKWRSLK 355
                       89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.59E-36121276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-39121262IPR015300DNA-binding pseudobarrel domain
CDDcd100172.48E-19126247No hitNo description
SMARTSM010194.3E-21128249IPR003340B3 DNA binding domain
PfamPF023623.3E-20128248IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138186249IPR003340B3 DNA binding domain
PfamPF065073.3E-34273355IPR010525Auxin response factor
PfamPF023091.1E-11699797IPR033389AUX/IAA domain
PROSITE profilePS5174523.837712796IPR000270PB1 domain
SuperFamilySSF542775.89E-12714788No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MSMSMFVSSQ SKILRAAWKS QPPRKAQQQQ AAAESPEATN HIAPSTASVE ASTNQVAEQQ  60
GAPLYNLPWK IPCKVMNVEL KAEPDTDEVY AQLTLLPEKW YGNVSKDKVE EEEVVPPAAT  120
ERPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLYSF FDRLIVAMPL TSLLDQDMSQ  180
HPPTQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE  240
LRVGVRRAMR QQANIPSSVI SSHSMHLGVL ATAWHAVNTG TMFTVYYKPR TSPSEFVVPR  300
DLYKESLKRN HSIGMRFKMT FEGEEAAEQR FTGTIVGVGD SDPSGWADSK WRSLKVRWDE  360
AASVPRPDRV SPWQIEPANS PSPVNPLPAP RTKRARPNVL ASSPDLSAVN KEVASKVMAN  420
SQQNGLPRAF HSQENMNLRS RFGDSNELNT SQKLTMWSSG SNQEKNNVSV QRELGSQSWM  480
QMRSPDGSSE ILSGFQPLKD TRNPLSSFPS QISGNRSNTW NTINVHYPDQ NANHNMYPGT  540
WSLMPPNTGF GVNQQNYLMT PDITLPQRSL NAKFGGNGAF TSLRAHGIDQ RSSGWLGHIE  600
PSSHIDDASS SLIKPQPLVI DHNVQKAKGS SCMLFGISLD SPAKPELLIS PPSVAFDGKL  660
QQDALEEDEC SDPSKTVKPL DGAQHDSATE KHQSCPDGTK NIQSKQQNGS SRSCKKVHKQ  720
GIALGRSIDL TKFTCYDELI AELDQMFDFN GELNSSSKNW MVVYTDNEGD MMLVGDDPWN  780
EFCNMVHKIF IYTREEVQKM NPGALNSRSE DSRSTSVERG LVGEGLRGGL STPSLNSENC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1424938252359Auxin response factor 1
4ldw_A1e-1424938252359Auxin response factor 1
4ldw_B1e-1424938252359Auxin response factor 1
4ldx_A1e-1424938252359Auxin response factor 1
4ldx_B1e-1424938252359Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.183080.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329770790.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0670610.0AK067061.1 Oryza sativa Japonica Group cDNA clone:J013091D19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620411.10.0auxin response factor 24 isoform X1
RefseqXP_015620412.10.0auxin response factor 24 isoform X1
RefseqXP_015620413.10.0auxin response factor 24 isoform X2
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLB8BPM50.0B8BPM5_ORYSI; Auxin response factor
STRINGOMERI12G08370.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]