PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035986-PA
Common NameOsI_38769
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 337aa    MW: 38727.2 Da    PI: 9.7579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035986-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-17105152148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT++Ed++lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  BGIOSGA035986-PA 105 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 152
                       79********************************************97 PP
2Myb_DNA-binding543.8e-17158203148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  BGIOSGA035986-PA 158 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 203
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.259100152IPR017930Myb domain
SMARTSM007171.9E-15104154IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-29104199IPR009057Homeodomain-like
PfamPF002492.9E-16105152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-19106159IPR009057Homeodomain-like
CDDcd001676.77E-11107152No hitNo description
PROSITE profilePS5129425.552153207IPR017930Myb domain
SMARTSM007172.2E-16157205IPR001005SANT/Myb domain
PfamPF002497.3E-15158202IPR001005SANT/Myb domain
CDDcd001673.41E-11160203No hitNo description
Gene3DG3DSA:1.10.10.601.7E-23160206IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAKSRRIAAA HLTCMEIFNR ALDWALEREL HTSRRGADDD RQILKLVHAA TARGRRSRGR  60
GSTSPPRLEF IKDHILKLEP TSTQRWKKSK KTGSEPIQVR EETRKGPWTE QEDLQLVCTV  120
RLFGERRWDF IAKVSGLNRT GKSCRLRWVN YLHPGLKRGR MSPHEERLIL ELHARWGNRW  180
SRIARRLPGR TDNEIKNYWR THMRKKAQER KSNMSPSSSS SSLTYQSCHP ETPSMIIGIE  240
EQELHGGSGC ITSIMKSTPV DMDGYPMDQI WMEIEAPNVL PGPCFDEAKD SASNSLSGPL  300
LPYPMWDYYC PETCLRMDDE IKVAPQFGYG KGVGPCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-271022071105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.116380.0callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329924230.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332820.0CT833282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877776.10.0myb-related protein MYBAS2 isoform X2
SwissprotQ4JL760.0MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA2ZLS50.0A2ZLS5_ORYSI; Uncharacterized protein
STRINGORUFI12G17930.11e-179(Oryza rufipogon)
STRINGOS12T0567300-001e-179(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-68myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]