PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA035947-PA | ||||||||
Common Name | OsI_38871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 361aa MW: 39217.9 Da PI: 4.2318 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.8 | 2.2e-06 | 8 | 29 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F+r+ nL +H t+ BGIOSGA035947-PA 8 PCQFCGKNFKRRGNLLNHELTC 29 6*****************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.954 | 7 | 41 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MASEWDSPCQ FCGKNFKRRG NLLNHELTCK YISDVHPQTE SSGDAQARKD ILGFHIPRQK 60 RTVPTFPASD YAQGGINGAT TSEAKVDRDP EEETDVLEAL LLLREQPAYP GEETFSDGEP 120 GAGNVDDEPA ASNPDNVLTM CSDKCSSSPV ECYGGDERRV GARAIAGVEE DDLNPNVGCR 180 GVTDCVDESD VIQKQKRKPD LSVADLRDLV EMKQQNMKAD TNIHDQGHPS VMQMQKNELG 240 LDLLPHKNSS DHEVPTLSVS SMDDPDGLVS TDTNSDKETE TVNVGIDINI PEQRASSVTR 300 MQNEKLGLNL LPRNDSSGHE VPILSVSSTD DLNSLIPTDT SSDKDTNSNV ADSLGHCPAQ 360 E |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53057 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980658 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619004.1 | 0.0 | uncharacterized protein LOC4352628 | ||||
Refseq | XP_015619005.1 | 0.0 | uncharacterized protein LOC4352628 | ||||
Refseq | XP_015619006.1 | 0.0 | uncharacterized protein LOC4352628 | ||||
Refseq | XP_015619007.1 | 0.0 | uncharacterized protein LOC4352628 | ||||
TrEMBL | A2ZM11 | 0.0 | A2ZM11_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM12G18470.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORGLA12G0202900.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART12G16800.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15758 | 11 | 11 |