PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035909-PA
Common NameOsI_38948
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 366aa    MW: 41904.1 Da    PI: 6.5097
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035909-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.5e-15381201498
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 
                       + +++p k a++++g+ ++     l+ +sg++W+v +  +k  ++ +l +GW++F+ka++L+e+D + F+ +gr   +f++ v +f+
  BGIOSGA035909-PA  38 HGISIPEKVADRFSGQITK--GFNLKAPSGETWRVSV--EKVADELILMSGWEDFAKAHELQENDLLFFTCNGRcnGSFSFDVLIFD 120
                       459**********888555..59999***********..*******************************99874455666666665 PP
2B342.71e-13260356198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                       f++vl  +  +++g+l++p  fa++h  +  +s+++ l+   + ++W vk+ +  + +++  +  W +F ++n+L+eg +++F+l++  ++ +
  BGIOSGA035909-PA 260 FVTVLQAPQIHRKGLLIVPSGFAADHLDS--RSQEILLMRpNKKEKWYVKYYHASTTRGFNCQ-RWIKFIRENRLREGYICIFELMKGaRRVT 349
                       788888999999**************544..44566666637779******556666666666.9*******************997779999 PP

                       .EEEEE- CS
                B3  92 lvvkvfr 98 
                       ++v+v+ 
  BGIOSGA035909-PA 350 MTVHVIG 356
                       9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-1821124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.16725122IPR003340B3 DNA binding domain
CDDcd100179.54E-1427120No hitNo description
Gene3DG3DSA:2.40.330.102.9E-1728124IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-528122IPR003340B3 DNA binding domain
PfamPF023621.7E-1237117IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-18253356IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-17253356IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-14258355No hitNo description
PROSITE profilePS5086311.899260358IPR003340B3 DNA binding domain
PfamPF023622.1E-12260356IPR003340B3 DNA binding domain
SMARTSM010197.6E-10260358IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGEKGCESCR EWQEHCYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL  60
KAPSGETWRV SVEKVADELI LMSGWEDFAK AHELQENDLL FFTCNGRCNG SFSFDVLIFD  120
ASGCEKVSCF FIGKKNSIGG QTQNAEQYHL SDSEDTSTPS TFLVGSPHKA STSKKLNGKT  180
KTNPNKDDPF STGKEPEDPN SSRSHVKHEM IEEEKSDDDD EHADYEHADY YYSRFANYLT  240
GEEREEIFSL VSLQPGNPVF VTVLQAPQIH RKGLLIVPSG FAADHLDSRS QEILLMRPNK  300
KEKWYVKYYH ASTTRGFNCQ RWIKFIRENR LREGYICIFE LMKGARRVTM TVHVIGKVDD  360
RFVLLG
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154893690.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878095.10.0B3 domain-containing protein Os12g0592300 isoform X1
SwissprotQ2QMT20.0Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0E0GW030.0A0A0E0GW03_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RJG10.0A0A0E0RJG1_ORYRU; Uncharacterized protein
TrEMBLA2ZM950.0A2ZM95_ORYSI; Uncharacterized protein
STRINGORUFI12G19440.10.0(Oryza rufipogon)
STRINGONIVA03G41700.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-24B3 family protein