PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA035841-PA

Common Name

OsI_39098

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB_related

Protein Properties

Length: 963aa MW: 105397 Da PI: 6.2977

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA035841-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.9	7.4e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +++++G g W+tI + R+ ++k++w++ BGIOSGA035841-PA 5 KQKWTAEEESALKAGIAKHGAGKWRTILKDPDfsnvlRYRSNVDLKDKWRN 55 79*********************************99*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.732	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.4E-14	2	63	IPR009057	Homeodomain-like
SMART	SM00717	9.4E-8	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-13	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	3.7E-7	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	5.18E-20	6	57	No hit	No description
SuperFamily	SSF46785	9.25E-15	115	195	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	7.3E-11	116	181	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	23.123	118	186	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.1E-13	118	188	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.9E-7	123	179	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF54695	1.33E-15	335	427	IPR011333	SKP1/BTB/POZ domain
Gene3D	G3DSA:3.30.710.10	7.3E-14	337	427	No hit	No description
Pfam	PF00651	8.9E-8	341	427	IPR000210	BTB/POZ domain
PROSITE profile	PS50097	11.75	342	410	IPR000210	BTB/POZ domain
PROSITE profile	PS51649	91.32	525	807	IPR027356	NPH3 domain
Pfam	PF03000	3.7E-86	525	783	IPR027356	NPH3 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence Send to blast
MGAPKQKWTA EEESALKAGI AKHGAGKWRT ILKDPDFSNV LRYRSNVDLK DKWRNMNVTV 60 NASGARDRVK APVVKKPRSA PKHEGHSTST AIAAVTSDGD DDVAEPVPLA TSTSSKRSLS 120 RLDNIIVEAV RSLNEPTGSY KTAIANYIEE QYWPPADFDH VLSSKLNDLT ASGKLIKVNR 180 KYRIAPSSSL SEGRSSKVVL LEDIKKEPTK LDREDVAVLT KSQIDAELAR MRTMTAEEAA 240 AAAARAVAEA EAIMTEAEAA VREAEAAEAD AVAAQAFAEA AMATFKNRSS AKLVIALSTS 300 VLVSNDHSSL KLPVGAGAAS VSSDLVVQFG FCLGYCTTGL PSDVLVEVGE MSFHLHKFPL 360 LSKSAILGRL IEENSDSDEC VIKLSDIPGG AKSFELVARF CYGLKIELSS ENVVYLRCAA 420 EHLEMTEETS GDNLINQTES FFNQVVLRSW KDSLEVLRTC DGLLPHAEDL HIVKRCIESL 480 AGKASIDPDL FGWPVSEHST MQSPGGSVLW NGISTGAKVR NCSSDWWYDD ASSLSFPTYK 540 RLISSMESRG IKQEIIAGSL TYYAKKFLPG LNRRQSTGPM PLPAATLSDE EQRRLLEEID 600 RMLPLQRGLI STNVLLWLLR TAMILKVDRA CISNLEKRVG MQLDEATLED LLLPNFSYTM 660 DTLYNVECVH RILDHFLAMD QTMGGGGASP CLDDVMASPS LAPITAVAKL IDGYLAEIAP 720 DINLKPLKFQ SLAAVLPEYA RPLDDGLYRA IDVYLKSHPT LPEAEREQLC RLIDCQKLSL 780 EACTHAAQNE RLPLRVVVQV LFFEQLQLRT SVAGCLLVSD NLEASSRTLR GGGAVAASGE 840 AGCWATAAVR ENQALRVGMD SMRLRLMELE RECSDMRQDI RKLGRGRRRL RGGGGIVAGG 900 KDGGGWAARV QRMLTPRMMK LQMCSAQHDA AEQQRMNNEH KKVEKVAKNK KQLSMDDGDD 960 EEA

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence Send to blast

MGAPKQKWTA EEESALKAGI AKHGAGKWRT ILKDPDFSNV LRYRSNVDLK DKWRNMNVTV  60
NASGARDRVK APVVKKPRSA PKHEGHSTST AIAAVTSDGD DDVAEPVPLA TSTSSKRSLS  120
RLDNIIVEAV RSLNEPTGSY KTAIANYIEE QYWPPADFDH VLSSKLNDLT ASGKLIKVNR  180
KYRIAPSSSL SEGRSSKVVL LEDIKKEPTK LDREDVAVLT KSQIDAELAR MRTMTAEEAA  240
AAAARAVAEA EAIMTEAEAA VREAEAAEAD AVAAQAFAEA AMATFKNRSS AKLVIALSTS  300
VLVSNDHSSL KLPVGAGAAS VSSDLVVQFG FCLGYCTTGL PSDVLVEVGE MSFHLHKFPL  360
LSKSAILGRL IEENSDSDEC VIKLSDIPGG AKSFELVARF CYGLKIELSS ENVVYLRCAA  420
EHLEMTEETS GDNLINQTES FFNQVVLRSW KDSLEVLRTC DGLLPHAEDL HIVKRCIESL  480
AGKASIDPDL FGWPVSEHST MQSPGGSVLW NGISTGAKVR NCSSDWWYDD ASSLSFPTYK  540
RLISSMESRG IKQEIIAGSL TYYAKKFLPG LNRRQSTGPM PLPAATLSDE EQRRLLEEID  600
RMLPLQRGLI STNVLLWLLR TAMILKVDRA CISNLEKRVG MQLDEATLED LLLPNFSYTM  660
DTLYNVECVH RILDHFLAMD QTMGGGGASP CLDDVMASPS LAPITAVAKL IDGYLAEIAP  720
DINLKPLKFQ SLAAVLPEYA RPLDDGLYRA IDVYLKSHPT LPEAEREQLC RLIDCQKLSL  780
EACTHAAQNE RLPLRVVVQV LFFEQLQLRT SVAGCLLVSD NLEASSRTLR GGGAVAASGE  840
AGCWATAAVR ENQALRVGMD SMRLRLMELE RECSDMRQDI RKLGRGRRRL RGGGGIVAGG  900
KDGGGWAARV QRMLTPRMMK LQMCSAQHDA AEQQRMNNEH KKVEKVAKNK KQLSMDDGDD  960
EEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	898	904	GGKDGGG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.68809	0.0	callus\| flower\| panicle\| root\| seed\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU368707	0.0	EU368707.1 Oryza sativa Indica Group SKIP interacting protein 17 (SIP17) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619997.1	0.0	BTB/POZ domain-containing protein At1g30440
Refseq	XP_015619998.1	0.0	BTB/POZ domain-containing protein At1g30440
Swissprot	Q9S9Q9	0.0	Y1044_ARATH; BTB/POZ domain-containing protein At1g30440
TrEMBL	B8BMZ7	0.0	B8BMZ7_ORYSI; Uncharacterized protein
STRING	LPERR12G15710.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1517	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	5e-57	telomere repeat binding factor 1

Publications ? help Back to Top
Gingerich DJ, et al. Cullins 3a and 3b assemble with members of the broad complex/tramtrack/bric-a-brac (BTB) protein family to form essential ubiquitin-protein ligases (E3s) in Arabidopsis. J. Biol. Chem., 2005. 280(19): p. 18810-21 [PMID:15749712] Sullivan S,Thomson CE,Kaiserli E,Christie JM Interaction specificity of Arabidopsis 14-3-3 proteins with phototropin receptor kinases. FEBS Lett., 2009. 583(13): p. 2187-93 [PMID:19524572]