PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035818-PA
Common NameOsI_39144
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YA
Protein Properties Length: 311aa    MW: 33663.2 Da    PI: 8.4791
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035818-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.82.4e-30150206158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       d+p+YVNaKQ+++I++RR++Rak+e+e++l  k+rkpylheSRh hA+rR+RgsgGrF
  BGIOSGA035818-PA 150 DAPIYVNAKQCSAIIRRRHARAKAERENRL-VKARKPYLHESRHLHAMRRARGSGGRF 206
                       68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.5E-33148209IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.128149209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-21152174IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-26152206IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-21183206IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMSFNKSQEG FGQVAAVATL ASNGGGSLPW LLYGEPLGQG KPAMSPEGVV PRAQTPLDPP  60
QVPAMDRGVP EILNFSMVPG KGEKCSEHST TIALQSPFAE YNGCFELGLG QSVVPSNYPY  120
ADQHYGLLSP YGVRPTPSGR ILIPPNMPAD APIYVNAKQC SAIIRRRHAR AKAERENRLV  180
KARKPYLHES RHLHAMRRAR GSGGRFLNTK KETNGKTTGG GRKVMDIIIP PLCPAASPSS  240
EQCNPSSVSS LSGSEVSSIY EHEDMDHFHS FDHLRTHFFT PLPSLMDVEH GAGNPFKWTA  300
ASDGCCDLLK A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-16150214266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A2e-16150207260HAPB protein
4g92_A2e-16150207260HAPB protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.227070.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329837650.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880320.0AB288032.1 Oryza sativa Japonica Group OsHAP2F mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0737420.0AK073742.1 Oryza sativa Japonica Group cDNA clone:J033067G24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618449.10.0nuclear transcription factor Y subunit A-10
RefseqXP_015618450.10.0nuclear transcription factor Y subunit A-10
TrEMBLA0A0E0RK430.0A0A0E0RK43_ORYRU; Uncharacterized protein
TrEMBLB8BN180.0B8BN18_ORYSI; Uncharacterized protein
TrEMBLQ2QM380.0Q2QM38_ORYSJ; CCAAT-binding transcription factor subunit B family protein, expressed
STRINGORUFI12G21270.10.0(Oryza rufipogon)
STRINGOS12T0618600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.23e-26nuclear factor Y, subunit A10