PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA035676-PA | ||||||||
Common Name | OsI_36958 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 105aa MW: 12048.6 Da PI: 8.5233 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.4e-18 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ lv+++ +G g+W++ ar g++Rt+k+c++rw++yl BGIOSGA035676-PA 31 RGPWTVDEDLTLVNYISDHGEGRWNALARAAGLKRTGKSCRLRWLNYL 78 89*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.181 | 26 | 82 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 26 | 81 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 31 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.97E-23 | 32 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.09E-11 | 33 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-8 | 82 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 7.481 | 83 | 105 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MEMVLQRTSH HPVPGEQQEA AAELSSAELR RGPWTVDEDL TLVNYISDHG EGRWNALARA 60 AGLKRTGKSC RLRWLNYLRP DVKRGNFTAE EQLLILDLHS RWGNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-16 | 26 | 105 | 22 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.99900 | 1e-49 | flower| leaf| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982426 | 1e-49 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY026332 | 1e-173 | AY026332.1 Oryza sativa Myb transcription factor JAMyb mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618000.1 | 2e-71 | transcription factor JAMYB | ||||
Swissprot | Q2QZJ8 | 2e-72 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A0E0RC24 | 5e-70 | A0A0E0RC24_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2ZGP9 | 1e-71 | A2ZGP9_ORYSI; Uncharacterized protein | ||||
TrEMBL | A3CDU0 | 9e-71 | A3CDU0_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI11G24630.1 | 9e-71 | (Oryza rufipogon) | ||||
STRING | OS11T0684000-01 | 9e-71 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 2e-42 | myb domain protein 24 |
Publications ? help Back to Top | |||
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