PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035433-PA
Common NameOsI_36463
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRF
Protein Properties Length: 381aa    MW: 41976.5 Da    PI: 9.2503
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035433-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.16.5e-23131174245
               WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        ep+rCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  BGIOSGA035433-PA 131 VEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEG 174
                       59***************************************996 PP
2QLQ58.32.3e-2078114137
               QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       ++FT++Q+++L++Q+l+yK++aan+ vP+ Ll++i++
  BGIOSGA035433-PA  78 GPFTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRR 114
                       59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-1278114IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-1479113IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.88879114IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.136130174IPR014977WRC domain
PfamPF088793.2E-19132173IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAMEIQEACK KNTMADVVSS KVEEEEEGKS KSKMGSWKPY TTCSWASLAS GLFALLDFSR  60
LGLSSGGSMQ GVLARVRGPF TPTQWMELEH QALIYKHIAA NVSVPSSLLL PIRRSLHPWG  120
WGSFPPGCAD VEPRRCRRTD GKKWRCSRDA VGDQKYCERH INRGRHRSRK HVEGRKATLT  180
IAEPSMVIAA GVSSRGHTVA RQKQVKGSAA TVSDPFSRQS NRKFLEKQNV VDQLSPMDSF  240
DFSSTQSSPN YDNVALSPLK LHHDHDESYI GHGAGSSSEK GSMMHESRLT VSKETLDDGP  300
LGEVFKRKNC QSASTEILTE KWTENPNLHC PSGILQMATK FNSISSGNTV NSGGTAVENL  360
ITDNGYLTAR MMNPHIVPTL L
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.473950.0callus| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329882640.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1030550.0AK103055.1 Oryza sativa Japonica Group cDNA clone:J033117J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615703.10.0growth-regulating factor 8
SwissprotQ6AWY10.0GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLA2ZFA10.0A2ZFA1_ORYSI; Uncharacterized protein
STRINGONIVA11G16660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129602731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-38growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]