PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA034825-PA | ||||||||
Common Name | OsI_35160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 130aa MW: 13984 Da PI: 11.7416 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 23.4 | 1.7e-07 | 1 | 23 | 106 | 128 |
NAM 106 LvfykgrapkgektdWvmheyrl 128 +vfy+grap+g+kt+W m+ey++ BGIOSGA034825-PA 1 MVFYQGRAPTGTKTRWKMNEYKA 23 89*******************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.897 | 1 | 56 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.06E-8 | 1 | 55 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MVFYQGRAPT GTKTRWKMNE YKAVADDADA AAAAMLHPMA PPRLRNELGV CRVYISTGTL 60 RSFDRRPLDN QAAAPTQQQV MPSLTAAAAV NTNLCGGGGG VVFAGAQGDS SPRLQLVVGV 120 ARTRRRRRRV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 128 | RRRRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54623 | 0.0 | callus| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991486 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109939 | 0.0 | AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615861.1 | 1e-74 | NAC domain-containing protein 90 | ||||
TrEMBL | A2ZBK8 | 2e-89 | A2ZBK8_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI11G03420.1 | 4e-74 | (Oryza rufipogon) | ||||
STRING | OS11T0154500-01 | 4e-74 | (Oryza sativa) | ||||
STRING | ONIVA11G03690.1 | 4e-74 | (Oryza nivara) | ||||
STRING | ORGLA11G0032800.1 | 4e-74 | (Oryza glaberrima) | ||||
STRING | ORGLA12G0180300.1 | 4e-74 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 3e-18 | NAC domain containing protein 61 |