PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034759-PA
Common NameOsI_35035
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 1181aa    MW: 128617 Da    PI: 5.8759
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034759-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.3e-1010321077550
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1    5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50  
                        k+ r+   NReA r++Rq+Kka +++Lee+vk L a N++L k+l+
  BGIOSGA034759-PA 1032 KKGRKPLGNREAVRKYRQKKKAHTAHLEEEVKRLRAINQQLVKRLQ 1077
                        78889999**********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031512.9E-2253344IPR004853Sugar phosphate transporter domain
SuperFamilySSF549288.15E-35517682IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010217.012520596IPR000504RNA recognition motif domain
SMARTSM003605.7E-22521592IPR000504RNA recognition motif domain
CDDcd005901.10E-19522592No hitNo description
PfamPF000766.3E-16522590IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3309.7E-37523677IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010211.486598679IPR000504RNA recognition motif domain
SMARTSM003607.4E-12599675IPR000504RNA recognition motif domain
CDDcd005901.81E-11600666No hitNo description
PfamPF000762.4E-10600664IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3304.3E-22678785IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.48E-21683771IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010215.528691768IPR000504RNA recognition motif domain
SMARTSM003605.4E-18692764IPR000504RNA recognition motif domain
PfamPF000761.0E-15693761IPR000504RNA recognition motif domain
Gene3DG3DSA:1.20.5.1702.1E-1310271096No hitNo description
SMARTSM003381.9E-910281095IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.84110301077IPR004827Basic-leucine zipper domain
PfamPF077161.4E-1110321085IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.46E-710321078No hitNo description
CDDcd146863.87E-1210351086No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1181 aa     Download sequence    Send to blast
MGAAGDNAAK APAAAAGSNG KGTAASMDVV SSSSSSSPAP APSVLKSVLL SYAYVSVWIT  60
LSFSVIVYNK YILDPKMYNW PFPISLTMIH MAFCASLAVV LVRVLRVVAV PASPPMTPSL  120
YAASVVPIGA LYALSLWFSN SAYIYLSVSF IQMLKALMPV AVYSLAVAFR TDSFRRASML  180
NMLGISAGVA VAAYGETRFD AFGVMLQLAA VAAEATRLVL IQILLTSKGM SLNPITSLYY  240
IAPCCLVFLT LPWYFVELPR LRAAAGAAVR PDVFVFGTNS LCAFALNLAV FLLVGKTSAL  300
TMNVAGVVKD WLLIAFSWTV IKDTVTPVNL VGYGIAFLGV AYYNHAKLQG LKAREAERRA  360
ASMATAKDGD AEAGARLLPE KDAAKSLYYP CNDQGMTNYM LPRNFELFKM PRRTDNAASA  420
NSVEPDKSEE CLEFDDEEEE VEEEEIEYEE IEEEIEEEEE VEEDEDVVEE VEEVDEEEDE  480
EEEEESDETE GVSKTKGVHQ KDVTEKGKHA ELLALPPHGS EVYVGGISSD VSSEDLKRLC  540
EPVGEVVEVR MMRGKDDSRG YAFVNFRTKG LALKVVKELN NAKLKGKRIR VSSSQAKNKL  600
FIGNVPHSWT DDDFRKAVEE VGPGVLKADL MKVSSANRNR GYGFVEYYNH ACAEYARQEM  660
SSPTFKLDSN APTVSWADPK NNDSASTSQV KSVYVKNLPK NVTQAQLKRL FEHHGEIEKV  720
VLPPSRGGHD NRYGFVHFKD RSMAMRALQN TERYELDGQV LDCSLAKPPA ADKKDDRVPL  780
PSSNGAPLLP SYPPLGYGIM SVPGAYGAAP ASTAQPMLYA PRAPPGAAMV PMMLPDGHLV  840
YVVQQPGGQL PLASPPPQQA GHRSGSGGRH GGSGSRYGGG GGSSGSSRPE EFVSETRLYM  900
RIYQYFPISQ IAESEEALYR QFTSVSHMEY EISGQESEVD SEVWLGWVAQ RRVCSRLETR  960
LPLPKLNTSC CLVTLSRGGR GGAGPPLQIP VDRESTKHRT HGDDTAIRRS WVLAEGESSD  1020
DDSCGGDKAK PKKGRKPLGN REAVRKYRQK KKAHTAHLEE EVKRLRAINQ QLVKRLQGQA  1080
ALEAEVVRLR SLLVDVRSRI NGALGSYPFQ AQCGVDNVLG CDGMAQCFAG KPELGERRSC  1140
TPSVVNCHIS SDSGQNLVVP HALSPSDVIG SFMVSSTSKD E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6r5k_D3e-1350077822305Polyadenylate-binding protein, cytoplasmic and nuclear
6r5k_F3e-1350077822305Polyadenylate-binding protein, cytoplasmic and nuclear
6r5k_H3e-1350077822305Polyadenylate-binding protein, cytoplasmic and nuclear
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.796510.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329787170.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687000.0AK068700.1 Oryza sativa Japonica Group cDNA clone:J013160I09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2ZB890.0A2ZB89_ORYSI; Uncharacterized protein
STRINGORUFI12G02510.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.12e-23bZIP family protein