PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034756-PA
Common NameOsI_35031
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 402aa    MW: 43530.4 Da    PI: 7.1867
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034756-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.22.6e-0926933656128
               NAM  56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           fF++ ++++ +++rk+r++ +g+W  + + k v++k g +vg  + + f     ++g+ tdW+m+e + 
  BGIOSGA034756-PA 269 GGRLFFTSCKRHKGSSTRKERTAGDGTWVRQNS-KGVKNKAGVKVGETQNFRFK----KDGSYTDWLMEEHHC 336
                       3568999999999****************8866.889999*************7....78999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18207.1E-4520259IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534744.94E-3121258IPR029058Alpha/Beta hydrolase fold
PfamPF078594.3E-2996259IPR013094Alpha/beta hydrolase fold-3
PROSITE profilePS510059.82223356IPR003441NAC domain
PfamPF023657.3E-5259335IPR003441NAC domain
SuperFamilySSF1019415.1E-9269356IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MATLPQMAAT KERQEAANPT TMTRTLVESV TNWIRVYSDG SVDRLGPPEA AAFMVLVPPY  60
DDPRDGVTVH DVATDHGVDV RLYLTTTAPA RRRPVLVHFH GGGFCLSHAA WSLYHRFYAR  120
LAVDLDVAGI VSVVLPLAPE HRLPAAIDAG HAALLWLRDV ASGGSDTIAH PAVERLCGAA  180
DFSRVFLIGD SAGGVLVHNV AARAGEAGAE ALDPIRLAGG VQLHPGFILP EKSPSELENP  240
PTPFMTQEKV DKFVVLALPF APVPRCEKGG RLFFTSCKRH KGSSTRKERT AGDGTWVRQN  300
SKGVKNKAGV KVGETQNFRF KKDGSYTDWL MEEHHCCRQQ AVAGDEEPVI CRMYVSPRAP  360
PDSAARQESA AFVQQQPAPQ VSEPPCDKRK RDDVAEEAPA AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2o7r_A3e-226723753214CXE carboxylesterase
2o7v_A3e-226723753214CXE carboxylesterase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.758100.0root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618312.11e-165probable carboxylesterase 17
TrEMBLA2ZB850.0A2ZB85_ORYSI; Uncharacterized protein
STRINGORUFI11G02320.10.0(Oryza rufipogon)
STRINGORGLA11G0021400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123478