PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034519-PA
Common NameOsI_35061
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 702aa    MW: 76419.9 Da    PI: 6.7201
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034519-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS180.61.1e-55392562218
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++  ++l++al +s++s +    +  a++  ++v P+lk+
  BGIOSGA034519-PA  39 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLKL 130
                       679*******************************9*****************************888887544.44446778899******** PP

              GRAS  94 shltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       ++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+fn+ v+ 
  BGIOSGA034519-PA 131 AYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNA-VEA 218
                       ************************966899****************************....9**************************.799 PP

              GRAS 185 rledleleeL....rvkpgEalaVnlvlqlhrlldesv 218
                       +l+++++++L     v++gEalaV++vlqlhrll+ + 
  BGIOSGA034519-PA 219 KLDEMDFDALrhdlGVRSGEALAVSVVLQLHRLLAVDD 256
                       9**999998843335667***************97654 PP
2GRAS357.81.6e-1093096912374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++  ++l++al +s++s +    +  a++  ++v P+lk+
  BGIOSGA034519-PA 309 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLKL 400
                       679*******************************9*****************************888887544.44446778899******** PP

              GRAS  94 shltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       ++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+fn+ v+ 
  BGIOSGA034519-PA 401 AYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNA-VEA 488
                       ************************966899****************************....9**************************.799 PP

              GRAS 185 rledleleeL....rvkpgEalaVnlvlqlhrll.......desvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                       +l+++++++L     v++gEalaV++vlqlhrll       +             +  ++L++v+slsPk++v++eqea+hn++ F erf ea
  BGIOSGA034519-PA 489 KLDEMDFDALrhdlGVRSGEALAVSVVLQLHRLLavddgrrH------AaagcltPLGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEA 575
                       9**999998843335667****************55554441......1334444699*********************************** PP

              GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrve 352
                       l+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegaer+erhe++++W +r+e+aG+++v ls++ a++a+ ll+ +++ g y+v 
  BGIOSGA034519-PA 576 LNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVACEGAERTERHERARQWAARMEAAGMESVGLSYSGAMEARKLLQSCGWAGpYEVR 667
                       ***********999.68889*****************************************************************8888**** PP

              GRAS 353 ee..sgslvlgWkdrpLvsvSaWr 374
                       ++   + ++++W++rpL++v+aWr
  BGIOSGA034519-PA 668 HDagGHGFFFCWHKRPLYAVTAWR 691
                       884345678**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.56412252IPR005202Transcription factor GRAS
PfamPF035143.9E-5339256IPR005202Transcription factor GRAS
PROSITE profilePS5098551.765282668IPR005202Transcription factor GRAS
PfamPF035145.6E-107309691IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MLSSATSSPA SSVYSPSPSP SNGSWVQELS HDQQSVRLIG LLYQCAAEVS AGSFDRANLC  60
LEHITQLASL DAPHALQRLA AVFADALARK LLNLIPGLSR ALLSSANSAD AHLVPVARRH  120
MFDVLPFLKL AYLTTNHAIL EAMEGERFVH VVDFSGPAAN PVQWIALFHA FRGRREGPPH  180
LRITAVHDSK EFLANMAAVL SKEAEAFDIA FQFNAVEAKL DEMDFDALRH DLGVRSGEAL  240
AVSVVLQLHR LLAVDDGRSH AATGCLTPDD MLSSATSSPA SSVYSPSPSP SNGSWVQELS  300
HDQQSVRLIG LLYQCAAEVS AGSFDRANLC LEHITQLASL DAPHALQRLA AVFADALARK  360
LLNLIPGLSR ALLSSANSAD AHLVPVARRH MFDVLPFLKL AYLTTNHAIL EAMEGERFVH  420
VVDFSGPAAN PVQWIALFHA FRGRREGPPH LRITAVHDSK EFLANMAAVL SKEAEAFDIA  480
FQFNAVEAKL DEMDFDALRH DLGVRSGEAL AVSVVLQLHR LLAVDDGRRH AAAGCLTPLG  540
SFLSAVRSLS PKIMVMTEQE ANHNGGAFQE RFDEALNYYA SLFDCLQRSA AAAAERARVE  600
RVLLGEEIRG VVACEGAERT ERHERARQWA ARMEAAGMES VGLSYSGAME ARKLLQSCGW  660
AGPYEVRHDA GGHGFFFCWH KRPLYAVTAW RPVASRRGHT RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-42266927380Protein SCARECROW
5b3h_A5e-42266926379Protein SCARECROW
5b3h_D5e-42266926379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.575640.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329904460.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9351540.0AL935154.2 Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619625.10.0scarecrow-like protein 3
TrEMBLB8BJ160.0B8BJ16_ORYSI; Uncharacterized protein
STRINGOS12T0138100-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-101scarecrow-like 3