PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA034480-PA

Common Name

OsI_35143

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 547aa MW: 60169.2 Da PI: 6.922

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA034480-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.6	9.6e-12	269	297	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le BGIOSGA034480-PA 269 KTMRRLAQNREAARKSRLRKKAYIQQLES 297 6679***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	8.887	267	311	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.2E-7	267	305	No hit	No description
Pfam	PF00170	7.8E-9	269	298	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.19E-7	269	302	No hit	No description
PROSITE pattern	PS00036	0	272	287	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.9E-29	348	422	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MGEASGSSGH PRQNPHVLGY GFHGAMPNSL PSANLFEQQG GANYFGELEE ALMQQVATLR 60 RTQQTATTTS TLHHGDTTLR VPERVSTNFL APDCKHSSKR INSTDFHCDR DPTHCDPNAA 120 LFTLCEQQGG ANYFGELEEA LMQQVATLRR TQQTATTTST LHHGDTTPFS TTATAAATAR 180 PPPTLDIFPS WPMRSLHTPK EGSNVTADTT DSESSSKNNS NQNASSDQHV LVGDMAGQFD 240 QIPQQEQHKK MATNSPTHSS KTGKALDPKT MRRLAQNREA ARKSRLRKKA YIQQLESSKL 300 KLAQMEQDIH RARSQGLLLG APGGNTSSGA TMFDVDYARW LEEDSRRMAE LHGGLHAHLP 360 DSDLRAIVDD TLTHYDHLFN LKGVAAKADV FHLITGMWAT PAERCFLWMG GFRPSELLKT 420 LTPQLDPLTE QQVVGICNLQ QSSQQAEEAL SQGLDQLHQS LAETVAGGSP LDDPNVGSFM 480 GHMAIALGQL SNLEGFVMQA DNLRQQTIHQ MHRILTVRQA ARCFLAIGEY HNRLRALSSL 540 WASRPRE

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MGEASGSSGH PRQNPHVLGY GFHGAMPNSL PSANLFEQQG GANYFGELEE ALMQQVATLR  60
RTQQTATTTS TLHHGDTTLR VPERVSTNFL APDCKHSSKR INSTDFHCDR DPTHCDPNAA  120
LFTLCEQQGG ANYFGELEEA LMQQVATLRR TQQTATTTST LHHGDTTPFS TTATAAATAR  180
PPPTLDIFPS WPMRSLHTPK EGSNVTADTT DSESSSKNNS NQNASSDQHV LVGDMAGQFD  240
QIPQQEQHKK MATNSPTHSS KTGKALDPKT MRRLAQNREA ARKSRLRKKA YIQQLESSKL  300
KLAQMEQDIH RARSQGLLLG APGGNTSSGA TMFDVDYARW LEEDSRRMAE LHGGLHAHLP  360
DSDLRAIVDD TLTHYDHLFN LKGVAAKADV FHLITGMWAT PAERCFLWMG GFRPSELLKT  420
LTPQLDPLTE QQVVGICNLQ QSSQQAEEAL SQGLDQLHQS LAETVAGGSP LDDPNVGSFM  480
GHMAIALGQL SNLEGFVMQA DNLRQQTIHQ MHRILTVRQA ARCFLAIGEY HNRLRALSSL  540
WASRPRE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.49126	0.0	callus\| flower\| panicle\| root\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32979435	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069411	0.0	AK069411.1 Oryza sativa Japonica Group cDNA clone:J023013G15, full insert sequence.
GenBank	AK102690	0.0	AK102690.1 Oryza sativa Japonica Group cDNA clone:J033103B09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617800.1	0.0	transcription factor TGAL4 isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	B8BJ54	0.0	B8BJ54_ORYSI; Uncharacterized protein
STRING	OMERI11G03020.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-131	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]