PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA033901-PA | ||||||||
Common Name | ARF1, ARF23, OsI_035079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 853aa MW: 94055.7 Da PI: 6.7931 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.8 | 1e-23 | 149 | 250 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + BGIOSGA033901-PA 149 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 238 99*****************************7333.34459************************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+v+v+r+ BGIOSGA033901-PA 239 ENGELRVGVRRA 250 9999*****996 PP | |||||||
2 | Auxin_resp | 116.3 | 2.7e-38 | 275 | 357 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp Wp+SkWrsLk BGIOSGA033901-PA 275 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKRNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWPESKWRSLK 357 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-42 | 142 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.02E-41 | 144 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.27E-22 | 147 | 249 | No hit | No description |
Pfam | PF02362 | 1.4E-21 | 149 | 250 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 149 | 251 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-24 | 149 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-35 | 275 | 357 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.47E-11 | 720 | 801 | No hit | No description |
PROSITE profile | PS51745 | 21.936 | 725 | 809 | IPR000270 | PB1 domain |
Pfam | PF02309 | 2.2E-6 | 771 | 809 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 853 aa Download sequence Send to blast |
MATAEVGGGG GEGDAAAAAV ARAGGGGGGG GGGGEDALFT ELWSACAGPL VTVPRVGEKV 60 FYFPQGHIEQ VEASTNQVGE QRMQLYNLPW KILCEVMNVE LKAEPDTDEV YAQLTLLPEL 120 KQQEDNGSTE EEVPSAPAAG HVRPRVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM 180 SRQPPTQELV AKDLHGVEWR FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRGEN 240 GELRVGVRRA MRQQTNVPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK PRTSPAEFVV 300 PYDRYMESLK RNYSIGMRFK MRFEGEEAPE QRFTGTIVGM GDSDPAGWPE SKWRSLKVRW 360 DEASSIPRPE RVSPWQIEPA VSPPPVNPLP VPRTKRLRPN ATALPADSSA IAKEAATKVV 420 VESEPNGTQR TFQTQENATP KSGFGNSSEL ESAQKSIMRP SGFDREKNNT PIQWKLGSDG 480 WMQMSKPESY SEMLSGFQPP KDVQTPQGFC SLPEQITAGH SNFWHTVNAQ YQDQQSNHNM 540 FPSSWSFMPP NTRLGLNKQN YSMIQEAGVL SQRPGNTKFG NGVYAALPGR GTEQYSGGWF 600 GHMMPNSHMD DTQPRLIKPK PLVVAHGDVQ KAKGASCKLF GIHLDSPAKS EPLKSPSSVV 660 YDGTPQTPGA TEWRRPDVTE VEKCSDPSKA MKPLDTPQPD SVPEKPSSQQ ASRNMSCKSQ 720 GVSTRSCKKV HKQGIALGRS VDLTKFNGYE ELIAELDDMF DFNGELKGPK KEWMVVYTDN 780 EGDMMLVGDD PWIEFCDMVH KIFIYTREEV QRMNPGTLNS RSEDSHANSM ERGSVGREMR 840 GCLSTSSLNS ENC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-178 | 20 | 379 | 1 | 354 | Auxin response factor 1 |
4ldw_A | 1e-178 | 20 | 379 | 1 | 354 | Auxin response factor 1 |
4ldw_B | 1e-178 | 20 | 379 | 1 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.10817 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32982020 | 0.0 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF140228 | 0.0 | AF140228.2 Oryza sativa (indica cultivar-group) putative auxin response factor 1 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617186.1 | 0.0 | auxin response factor 23 isoform X1 | ||||
Refseq | XP_015617187.1 | 0.0 | auxin response factor 23 isoform X1 | ||||
Swissprot | A2ZET6 | 0.0 | ARFW_ORYSI; Auxin response factor 23 | ||||
TrEMBL | A0A0E0J9W3 | 0.0 | A0A0E0J9W3_ORYNI; Auxin response factor | ||||
STRING | ONIVA12G10760.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|