PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA033525-PA | ||||||||
Common Name | OsI_37048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 18986.3 Da PI: 7.1667 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F+++ L H +H BGIOSGA033525-PA 76 FECRTCGRRFPSHQALGGHRTSH 98 89*************99998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 7.5E-10 | 75 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.092 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.26E-7 | 76 | 138 | No hit | No description |
PROSITE profile | PS50157 | 10.325 | 76 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 116 | 138 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.4E-9 | 116 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.099 | 116 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 118 | 138 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MDQQEDYTSD LQLELEEEED DNQLSQLAEL DVQLSLSLAC GSTTAMSSSG DEEDAEPRRR 60 KRRRRRRDEE AAAAAFECRT CGRRFPSHQA LGGHRTSHLR PTTNKRRPGP SKPLIHACEV 120 CGLGFQMGQA LGGHMRRHRP RNIDLGHKQI VMPEIRPSSS LQLLDLFV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 60 | PRRRK |
2 | 58 | 65 | RRKRRRRR |
3 | 58 | 66 | RRKRRRRRR |
4 | 59 | 63 | RKRRR |
5 | 59 | 66 | RKRRRRRR |
6 | 59 | 67 | RKRRRRRRD |
7 | 60 | 65 | KRRRRR |
8 | 60 | 66 | KRRRRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.94347 | 0.0 | root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134045 | 0.0 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. | |||
GenBank | AK243307 | 0.0 | AK243307.1 Oryza sativa Japonica Group cDNA, clone: J100055D19, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616383.1 | 3e-83 | zinc finger protein ZAT1 | ||||
TrEMBL | A2ZH00 | 1e-119 | A2ZH00_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA11G0188000.1 | 1e-106 | (Oryza glaberrima) | ||||
STRING | OBART11G23480.1 | 1e-102 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-16 | C2H2 family protein |