PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA033523-PA | ||||||||
Common Name | OsI_37054 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 164aa MW: 18615.8 Da PI: 6.6231 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00024 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F+++ L H +H BGIOSGA033523-PA 72 FECRTCGRRFPSHQALGGHRTSH 94 89*************99998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 7.2E-10 | 71 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.325 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.09E-7 | 72 | 134 | No hit | No description |
SMART | SM00355 | 0.092 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.099 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 112 | 134 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.3E-9 | 112 | 136 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MDQQEDYTSD LQLELEEEDD DQLSQLAELD VQLSLACGST TAMSSSGDEE DEEPRRRKRR 60 SRRREEEAAP AFECRTCGRR FPSHQALGGH RTSHLRPTTN KRRPGPSKPL IHACEVCGLG 120 FQMGQALGGH MRRHRPRNID LGHKQIVMPE IRPSSSLQLL DLFV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 57 | PRRRK |
2 | 54 | 62 | RRRKRRSRR |
3 | 56 | 64 | RKRRSRRRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.94347 | 0.0 | root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616383.1 | 1e-77 | zinc finger protein ZAT1 | ||||
TrEMBL | A2ZH05 | 1e-115 | A2ZH05_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA11G0188000.1 | 3e-99 | (Oryza glaberrima) | ||||
STRING | OBART11G23480.1 | 1e-95 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 4e-19 | C2H2 family protein |