PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA033234-PA

Common Name

OsI_34228

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 810aa MW: 92002.8 Da PI: 8.6976

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA033234-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.4e-22	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+ +Y+ + GF+vrk++s+k+k +g++ + ++vC +eg+r+e+k++ + + +raetrt+C+ ++ v +++ +g+++v++l+leHnH l+ BGIOSGA033234-PA 12 FWVSYGGQKGFEVRKRYSNKRKSDGKVRSCRYVCANEGHRKEDKRD-HLTMCPRAETRTDCQVRMGVVLDQeKGNYKVADLVLEHNHILQ 100 99***************************************999.9999*************9999*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-17	12	99	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.9E-25	222	316	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.174	462	498	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-5	470	495	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.5E-5	473	500	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence Send to blast
MEFNTVDEAW MFWVSYGGQK GFEVRKRYSN KRKSDGKVRS CRYVCANEGH RKEDKRDHLT 60 MCPRAETRTD CQVRMGVVLD QEKGNYKVAD LVLEHNHILQ LPETSHLMVS QRKISELQGF 120 EIETADDAGI GPKAAHQLAS IQVGGSLNLN YTLRDHKNYL RGKRQREMVY GQAGSMLMHF 180 QDKIAENPSF QYALQMDSEE QIANIFWVDA KMLTDYAYFG DVVSFDTTFG TNKESRPFGV 240 FVGFNQFRET MVFGAILLYD ETYESFKWLF ETFLKAHNGK QPKTIYIDQD SAMGKAIKKV 300 FLESWHGLCT FHIMQNAVKH VAELEDEESS NSPKQTAEDN KEERSILADF SACMFEYEDE 360 ETFEQAFSTI RAKASKQSWV VEDKRENELN TEFESRKKIP RIKMRTPMLI QASKLYTPII 420 FEAFQAEYER SMVACTTALE GNNCYLVAIG SLDENCTFEK EYKVVGDPLE QTSTCGCGMF 480 SRTGILCAHA LKVLDLMNIK SLPSQYVLKR WTRGARSGTV QDNHGRSIIE NPRLNEMLRY 540 KDMTRKFLNL ALRAASHPGS TLLVNNTLDI LSKQVEEEIN GFTDTIALGP TDVTPPSDLV 600 STARLKKKEV ETKTSKRKKN WLDKLHKSTK NGSNKGGKRK KKGSKEQKTA KTGGKKKGKE 660 ASVHDNPAGQ NIYPSTSLPM EEMSEPYMAI NTFSQLLTYL QNAIRFDIQQ SNIPGRSIKE 720 LKRRPLCSST RSLLRDGEEE FLLSLTAEEA AMFLHSLPFS IRRALPVAAH GLLELGTRTS 780 SSWHRCAVAV TKRCILHTFR SPSPQLSTAA

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence Send to blast

MEFNTVDEAW MFWVSYGGQK GFEVRKRYSN KRKSDGKVRS CRYVCANEGH RKEDKRDHLT  60
MCPRAETRTD CQVRMGVVLD QEKGNYKVAD LVLEHNHILQ LPETSHLMVS QRKISELQGF  120
EIETADDAGI GPKAAHQLAS IQVGGSLNLN YTLRDHKNYL RGKRQREMVY GQAGSMLMHF  180
QDKIAENPSF QYALQMDSEE QIANIFWVDA KMLTDYAYFG DVVSFDTTFG TNKESRPFGV  240
FVGFNQFRET MVFGAILLYD ETYESFKWLF ETFLKAHNGK QPKTIYIDQD SAMGKAIKKV  300
FLESWHGLCT FHIMQNAVKH VAELEDEESS NSPKQTAEDN KEERSILADF SACMFEYEDE  360
ETFEQAFSTI RAKASKQSWV VEDKRENELN TEFESRKKIP RIKMRTPMLI QASKLYTPII  420
FEAFQAEYER SMVACTTALE GNNCYLVAIG SLDENCTFEK EYKVVGDPLE QTSTCGCGMF  480
SRTGILCAHA LKVLDLMNIK SLPSQYVLKR WTRGARSGTV QDNHGRSIIE NPRLNEMLRY  540
KDMTRKFLNL ALRAASHPGS TLLVNNTLDI LSKQVEEEIN GFTDTIALGP TDVTPPSDLV  600
STARLKKKEV ETKTSKRKKN WLDKLHKSTK NGSNKGGKRK KKGSKEQKTA KTGGKKKGKE  660
ASVHDNPAGQ NIYPSTSLPM EEMSEPYMAI NTFSQLLTYL QNAIRFDIQQ SNIPGRSIKE  720
LKRRPLCSST RSLLRDGEEE FLLSLTAEEA AMFLHSLPFS IRRALPVAAH GLLELGTRTS  780
SSWHRCAVAV TKRCILHTFR SPSPQLSTAA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC078840	0.0	AC078840.6 Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence.
GenBank	AC084023	0.0	AC084023.8 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025877975.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B8BHR2	0.0	B8BHR2_ORYSI; Uncharacterized protein
STRING	Sb09g006170.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-74	FAR1-related sequence 5