PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA033142-PA | ||||||||
Common Name | OsI_34050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 690aa MW: 75215.4 Da PI: 6.7606 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.6e-23 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + BGIOSGA033142-PA 148 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--R 236 89****************************996555555..8999*********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++ +el+v+++r+ BGIOSGA033142-PA 237 TRHGELCVGIRRA 249 479999*****97 PP | |||||||
2 | Auxin_resp | 116.7 | 1.9e-38 | 308 | 391 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as++++Fev Y+Prast++Fvvk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+ BGIOSGA033142-PA 308 AASLASSGQPFEVAYYPRASTPDFVVKAASVQAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPNRWPNSPWRLLQ 391 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-29 | 139 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-36 | 141 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.32E-21 | 147 | 248 | No hit | No description |
Pfam | PF02362 | 1.7E-21 | 148 | 249 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 148 | 250 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.647 | 148 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.0E-33 | 308 | 391 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.106 | 595 | 675 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MRVLDWQVWW VSGDRIWGLE MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ 60 GHAEHADGGG GAAAAAAELG PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA 120 EFREPDELCP LGAAGDAAEP SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR 180 ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTRHG 240 ELCVGIRRAK RMACGGMECM SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV 300 RMADVVEAAS LASSGQPFEV AYYPRASTPD FVVKAASVQA AMRIQWCSGM RFKMAFETED 360 SSRISWFMGT ISSVQVADPN RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI 420 HLGPFSSPRK KLRVPPHPDF PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA 480 QFGLPLTDHQ LNKLHLGLLH SGSFNRLDAI TPPSRISKGF VKDDTPYNAV WKGIFTEQQI 540 TSSGSTETLS PGVTGNSAPN GNAHKTGNAS DGSGSSICIG FSSQGHEASD LGLEAGHCKV 600 FMESEDVGRT IDLSVFGSYE ELYGRLADMF GIEKEEIINH LHFHDAAGVV KHPGEVPFSD 660 FMKAARRLTI IAGDRERIER PLIECLVEQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-78 | 20 | 416 | 36 | 392 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.3105 | 0.0 | callus| flower| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297610667 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318617 | 0.0 | AK318617.1 Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614842.1 | 0.0 | auxin response factor 22 | ||||
Swissprot | Q9AV47 | 0.0 | ARFV_ORYSJ; Auxin response factor 22 | ||||
TrEMBL | B8BHI0 | 0.0 | B8BHI0_ORYSI; Auxin response factor | ||||
STRING | ONIVA10G14700.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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