PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033142-PA
Common NameOsI_34050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 690aa    MW: 75215.4 Da    PI: 6.7606
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033142-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23148249199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +
  BGIOSGA033142-PA 148 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--R 236
                       89****************************996555555..8999*********************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       ++ +el+v+++r+
  BGIOSGA033142-PA 237 TRHGELCVGIRRA 249
                       479999*****97 PP

2Auxin_resp116.71.9e-38308391183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa+ as++++Fev Y+Prast++Fvvk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+
  BGIOSGA033142-PA 308 AASLASSGQPFEVAYYPRASTPDFVVKAASVQAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPNRWPNSPWRLLQ 391
                       68899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-29139252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-36141252IPR015300DNA-binding pseudobarrel domain
CDDcd100175.32E-21147248No hitNo description
PfamPF023621.7E-21148249IPR003340B3 DNA binding domain
SMARTSM010191.7E-21148250IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647148250IPR003340B3 DNA binding domain
PfamPF065073.0E-33308391IPR010525Auxin response factor
PROSITE profilePS5174516.106595675IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MRVLDWQVWW VSGDRIWGLE MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ  60
GHAEHADGGG GAAAAAAELG PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA  120
EFREPDELCP LGAAGDAAEP SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR  180
ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTRHG  240
ELCVGIRRAK RMACGGMECM SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV  300
RMADVVEAAS LASSGQPFEV AYYPRASTPD FVVKAASVQA AMRIQWCSGM RFKMAFETED  360
SSRISWFMGT ISSVQVADPN RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI  420
HLGPFSSPRK KLRVPPHPDF PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA  480
QFGLPLTDHQ LNKLHLGLLH SGSFNRLDAI TPPSRISKGF VKDDTPYNAV WKGIFTEQQI  540
TSSGSTETLS PGVTGNSAPN GNAHKTGNAS DGSGSSICIG FSSQGHEASD LGLEAGHCKV  600
FMESEDVGRT IDLSVFGSYE ELYGRLADMF GIEKEEIINH LHFHDAAGVV KHPGEVPFSD  660
FMKAARRLTI IAGDRERIER PLIECLVEQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-782041636392Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.31050.0callus| flower| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976106670.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3186170.0AK318617.1 Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614842.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLB8BHI00.0B8BHI0_ORYSI; Auxin response factor
STRINGONIVA10G14700.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]