PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033132-PA
Common NameOsI_34031
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 271aa    MW: 30355.1 Da    PI: 6.1034
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033132-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.23.9e-5051331129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrF P+deel+++yL++kv+++++    ++ +vd++  ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ v+
  BGIOSGA033132-PA   5 LPPGFRFCPSDEELICFYLRNKVANHRVAS-GTLVDVDLHAREPWELPEVAKLTAEEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRIVH 96 
                       79*************************888.88***************87788899**********************************999 PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +  ++++vg++ktLvfy grap+g+kt+Wvmhe+rle
  BGIOSGA033132-PA  97 EGtTRAVVGMRKTLVFYLGRAPNGQKTTWVMHEFRLE 133
                       9766778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-593151IPR003441NAC domain
PROSITE profilePS5100557.4245151IPR003441NAC domain
PfamPF023656.0E-286132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MESTLPPGFR FCPSDEELIC FYLRNKVANH RVASGTLVDV DLHAREPWEL PEVAKLTAEE  60
WYFFSFRDRK YATGSRTNRA TKTGYWKATG KDRIVHEGTT RAVVGMRKTL VFYLGRAPNG  120
QKTTWVMHEF RLETPNSQPK EDWVLCRVFD KKKPSTIEAE GGGSSGSDLF IPGATDGSTD  180
PSSPTTMAPL LGSSPDPTVV DRFDHRFLEH RPTGDDMAVG AHFGTCQGGN NDATMALRMG  240
FEEHGMGEII EMEPAWRQGG SNCVYRDELY F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-49215214166NO APICAL MERISTEM PROTEIN
1ut4_B3e-49215214166NO APICAL MERISTEM PROTEIN
1ut7_A3e-49215214166NO APICAL MERISTEM PROTEIN
1ut7_B3e-49215214166NO APICAL MERISTEM PROTEIN
3swm_A4e-49215217169NAC domain-containing protein 19
3swm_B4e-49215217169NAC domain-containing protein 19
3swm_C4e-49215217169NAC domain-containing protein 19
3swm_D4e-49215217169NAC domain-containing protein 19
3swp_A4e-49215217169NAC domain-containing protein 19
3swp_B4e-49215217169NAC domain-containing protein 19
3swp_C4e-49215217169NAC domain-containing protein 19
3swp_D4e-49215217169NAC domain-containing protein 19
4dul_A3e-49215214166NAC domain-containing protein 19
4dul_B3e-49215214166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.391290.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166363690.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195580.0AK119558.1 Oryza sativa Japonica Group cDNA clone:002-106-A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613250.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ84TE67e-61NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLB8BHG60.0B8BHG6_ORYSI; Uncharacterized protein
STRINGONIVA10G14530.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-74NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]