PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032906-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 362aa    MW: 39384.1 Da    PI: 5.4529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032906-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM583.4e-18111363127
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekew..yfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       +G+rF P+d el+   L +k++g++  ++e ++++++i++++P +L +++++ ee+e   yfFs+ + +    k  +ra++ g+Wk     ++
  BGIOSGA032906-PA  11 AGVRFLPKDLELL-AILDAKLRGSPlGPVEAIFHDTQILDFHPYKLYEMYAEdEEEEGyiYFFSTMQFRC--RKIVERAAQGGRWKVNNC-ET 99 
                       7************.78*********54555569*************743333133333347777776665..57899*********7655.34 PP

               NAM  92 vlskkgelvglkktLvfyk..grapkgektdWvmheyr 127
                       + + +g +vg k t+ fy+  g +++   t+W m+e++
  BGIOSGA032906-PA 100 LEV-GGVAVGRKFTMNFYEhiGGDNDLIWTNWGMQEFA 136
                       444.89************5336788889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-267156IPR003441NAC domain
PROSITE profilePS5100521.7759156IPR003441NAC domain
PfamPF023656.5E-1011136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAAPEGQNKF AGVRFLPKDL ELLAILDAKL RGSPLGPVEA IFHDTQILDF HPYKLYEMYA  60
EDEEEEGYIY FFSTMQFRCR KIVERAAQGG RWKVNNCETL EVGGVAVGRK FTMNFYEHIG  120
GDNDLIWTNW GMQEFARIIG PNKELADLAL YRLYKKKITR GTGEEKPEDI AAASDGDTES  180
SMNKRRRVEA SAAAMALPPP PPSPGLPGTM MFMAADQANV ASTSQEWHGQ FANGAAAAPS  240
PSGCWPWAPP PTPSAVEPFS FWASASAATP PAAANYHPSP QPQPLPPQGG EYYSRHGAFS  300
VAPVPASXCS TPSPEAATSX LLATTSPLPA AVPTRDIRRI FVEVPVKSLN FNLEALKCDT  360
VK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183187KRRRV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329961510.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109420.0AK110942.1 Oryza sativa Japonica Group cDNA clone:002-173-H02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876515.10.0uncharacterized protein LOC4348617
TrEMBLA0A0E0IS190.0A0A0E0IS19_ORYNI; Uncharacterized protein
STRINGONIVA10G09240.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1920699