PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA032902-PA | ||||||||
Common Name | OsI_33553 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 112aa MW: 12714.5 Da PI: 5.2186 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41.6 | 3.8e-13 | 11 | 96 | 3 | 87 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekew..yfFskrdkkyatgkrknratksgyWkatg 87 +G+rF P+d el+ L +k++g++ ++e ++++++i++++P +L +++++ ee+e yfFs+ + + k +ra++ g+Wk BGIOSGA032902-PA 11 AGVRFLPKDLELL-AILDAKLRGSPlGPVEAIFHDTQILDFHPYKLYEMYAEdEEEEGyiYFFSTMQFRC--RKIVERAAQGGRWKVNN 96 7************.78*********54555569*************743333133333347777776665..57899*********654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-16 | 6 | 110 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.681 | 9 | 112 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-6 | 11 | 99 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MAAPEGQNKF AGVRFLPKDL ELLAILDAKL RGSPLGPVEA IFHDTQILDF HPYKLYEMYA 60 EDEEEEGYIY FFSTMQFRCR KIVERAAQGG RWKVNNCETL EVGGVAVGRK SP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32996151 | 2e-91 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC027660 | 4e-89 | AC027660.2 Oryza sativa Japonica Group chromosome 10 clone BAC nbxb0045B21, complete sequence. | |||
GenBank | AK110942 | 4e-89 | AK110942.1 Oryza sativa Japonica Group cDNA clone:002-173-H02, full insert sequence. | |||
GenBank | AP014966 | 4e-89 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 4e-89 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876515.1 | 3e-76 | uncharacterized protein LOC4348617 | ||||
TrEMBL | A0A0E0IS19 | 6e-75 | A0A0E0IS19_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0IS20 | 7e-75 | A0A0E0IS20_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QZ30 | 7e-75 | A0A0E0QZ30_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Z780 | 4e-78 | A2Z780_ORYSI; Uncharacterized protein | ||||
TrEMBL | A3C4Q2 | 7e-75 | A3C4Q2_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI10G10350.1 | 1e-75 | (Oryza rufipogon) | ||||
STRING | ONIVA10G09240.1 | 1e-75 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 |