PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA032645-PA

Common Name

OsI_32963

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-YC

Protein Properties

Length: 335aa MW: 36935.6 Da PI: 5.1066

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA032645-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	73.9	2.3e-23	31	129	2	97
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 +++fw ie+++ ++ lP++r+k+i+ a e m+sa++P++++k celf+ el lr+w+ a++ +r+ + +dia+a++ t+ + f BGIOSGA032645-PA 31 MEKFWRMSqeqIEESAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAINTTESYHF 123 78899876122555555566779********************************************************************** PP NF-YC 92 lvdivp 97 l ++v BGIOSGA032645-PA 124 LANVVH 129 *99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.1E-19	53	128	IPR009072	Histone-fold
Pfam	PF00808	5.0E-9	53	115	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.1E-16	53	129	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MPIPEKDGVE DNQEDDTFSR LQLLAQQRHA MEKFWRMSQE QIEESAGNEE LILPISRVKN 60 IIHAKEGGMM LSADTPAFVT KLCELFVQEL ILRAWVCANS HNREIILGTD IAEAINTTES 120 YHFLANVVHG HQALGSNIPE IGVSAWKRHK LDEMTSLCHP PQAVQVTDLA NHPPNIPVCP 180 PIGQSGTQHT TSTHVLMMQG ESIHKASKEK SPLKEVMVPT NKVGMTNSSY AVPNGGGATS 240 SKVVIDSPKG ETAQVFSSQH ACPSLEDNYV IPIPAGHGDS FRTLDEANIP QLHQEQKNFI 300 SQDAIVGENI PLNESLEKSK HKDEDLLFPD KDLPE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.102991	0.0	flower\| panicle\| seed
Os.96237	0.0	flower\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	156765576	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC097278	0.0	AC097278.6 Oryza sativa chromosome 10 BAC OSJNBa0040E17 genomic sequence, complete sequence.
GenBank	AK288961	0.0	AK288961.1 Oryza sativa Japonica Group cDNA, clone: J090084F09, full insert sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613386.1	0.0	uncharacterized protein LOC4348238
TrEMBL	A2Z5N8	0.0	A2Z5N8_ORYSI; Uncharacterized protein
STRING	ONIVA04G28560.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13968	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-18	nuclear factor Y, subunit C2