PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032255-PA
Common NameOsI_32825
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 273aa    MW: 28309.7 Da    PI: 5.8012
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032255-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000424463120
                      EEETTTTEEESSHHHHHHHH CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                      + C  Cgk+F+++  +  H 
  BGIOSGA032255-PA 44 FACRVCGKRFPSQQAMAGHE 63
                      78***********9988885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.0584477IPR007087Zinc finger, C2H2
PfamPF139122.4E-54462IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSPMRPRSSS ASSTSPVAGK KEKTATKPAG GGARDPPKGR SSSFACRVCG KRFPSQQAMA  60
GHEDHCRRHE DHVREAAAAT AAASGGCSNR ATCGALLASY TCATQLLAAA AVADWSQVAA  120
GIPLSKEQLV VAVAIVVADD GQGQAAEVFL LDLAAEELNL GPSMNNEATS IPKALPVLSG  180
QFIVDGATGL ADDLGRVEAE GLAYVEGLEE VEEVDGCSSR GSANLCPVGR WTSDARLHDA  240
PPHNTFAFLS HSVQSRHHLL EGPSYIVTQL LPE
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329928271e-138
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8BFU40.0B8BFU4_ORYSI; Uncharacterized protein
STRINGORUFI10G03150.11e-133(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1762566