PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032120-PA
Common NameOsI_33133
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 719aa    MW: 80251.2 Da    PI: 9.5331
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032120-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1301.7e-09151216176
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkw 76 
                       +fYn Y+ e+GF +r+ ks+++ +++   ++++vC + gk+ + ++         +++r+gC+a l +k ++d+ w
  BGIOSGA032120-PA 151 DFYNLYSFECGFGIRRGKSYTN-TKQFRNWQQLVCRRAGKPVRANS---------SSSRCGCNALLYLKWTDDDGW 216
                       6*******************99.5566899*********9987655.........59************9998888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-6151216IPR004330FAR1 DNA binding domain
PfamPF105512.1E-13245313IPR018289MULE transposase domain
PfamPF044348.2E-5425460IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.099425461IPR007527Zinc finger, SWIM-type
SMARTSM005750.0044436463IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MDNPEIEHAA STPRGGIPST PPGEKIAAIA IADEPPPAPA RSDRVLGKRA RKDIAEGCSP  60
SPTATRAMRA SVDDSMEMHT SKFASDGVDD PQQCTPRRTP HGRAGTPARL YAPGRVTAME  120
QSMREYAIAR RGYVFDPRQG IEFDLLSEAY DFYNLYSFEC GFGIRRGKSY TNTKQFRNWQ  180
QLVCRRAGKP VRANSSSSRC GCNALLYLKW TDDDGWADLD SKGRIHTLLW ADGRNKFNYK  240
CFGNVVTFDT MYRNNLYDMP FGLFVGVNNH FQMCIFACVL FREETVNAFK WAFKEFTSLM  300
VAGPPKTILT ERYNLTGNKF LTQIFKNRKR WAKPYFAGEF CAGQTSTQRS ECANHLLKKL  360
ISKNAPMHLF VSQYSKLLAD RDAQEDREET RKSGMFYVTN TIGVTEFTVK HVRSDDLERW  420
QKALFKVTVI GEMARLTCEC GMCEHMGLLC RHAIRVIIHL GGQRISDGNL MKRWTTGARD  480
VLPLHMAAYR SEAGSMQSKT FRHNMLYMAA LELVQQGDLT VENFHSAMEG IEELKRKLAS  540
AQPRSASTEG TNDNSLGQSD DTPAPGVPPT SEQSCMVSSA PTPTIVEQNS PARNGVPIQP  600
PEPRRCRGRP TNSRLKHPAD NPKRVARTRF CKKCNKPGHN SATCIDGERN HEAMASGALH  660
VEASKGQTHE ARASGALHVD SNKVHTKVCS RCHIAGHMKT TCGKTSSYVK QGKCKSKTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2Z6530.0A2Z653_ORYSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.22e-20FAR1-related sequence 4