PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA031952-PA

Common Name

OsI_33516

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 434aa MW: 46008.3 Da PI: 8.1996

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA031952-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.5e-39	88	147	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCy+nny+++qPr+fCk C+ryWt+GGa+rnvPvG+grrknk++ BGIOSGA031952-PA 88 PDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKNA 147 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-38	75	145	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	90	146	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	92	146	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	94	130	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MGECRGGGDG LIKLFGKTIP VQPDAKDVQQ HSGSSSSSTE SDVQETAAVA VADPSPRSEV 60 VDGESPPQPG GEAASHQQQQ KEMKLKKPDK ILPCPRCSSM DTKFCYFNNY NVNQPRHFCK 120 HCQRYWTAGG AMRNVPVGAG RRKNKNATAA AHFLHRVRAC AAAAAMPAAP HDATNATVLS 180 FGGGGGGHDA LPVTLDLADK MTRLGKEGLV AHARNADAAA ACSEVSSNRD DEQIGNTVAK 240 PANGLQQHPP PPHHHHHSAM NGGGIWPYYT SGIAIPIYPA APAYWGCMIP PPGAWSLPWP 300 ATVQSQAISS SSPPTSATPS VSSFTLGKHP REGGDHEARD HHGNGKVWVP KTIRIDNADE 360 VARSSIRSLF AFRGGDKVDD NNDDDGTSVH KLATTVFEPK RDGKTAKHPA ITSLPLLHTN 420 PVALTRSATF QEGS

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MGECRGGGDG LIKLFGKTIP VQPDAKDVQQ HSGSSSSSTE SDVQETAAVA VADPSPRSEV  60
VDGESPPQPG GEAASHQQQQ KEMKLKKPDK ILPCPRCSSM DTKFCYFNNY NVNQPRHFCK  120
HCQRYWTAGG AMRNVPVGAG RRKNKNATAA AHFLHRVRAC AAAAAMPAAP HDATNATVLS  180
FGGGGGGHDA LPVTLDLADK MTRLGKEGLV AHARNADAAA ACSEVSSNRD DEQIGNTVAK  240
PANGLQQHPP PPHHHHHSAM NGGGIWPYYT SGIAIPIYPA APAYWGCMIP PPGAWSLPWP  300
ATVQSQAISS SSPPTSATPS VSSFTLGKHP REGGDHEARD HHGNGKVWVP KTIRIDNADE  360
VARSSIRSLF AFRGGDKVDD NNDDDGTSVH KLATTVFEPK RDGKTAKHPA ITSLPLLHTN  420
PVALTRSATF QEGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.5736	0.0	callus\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32978605	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615013.1	0.0	cyclic dof factor 1
TrEMBL	A0A0E0GN10	0.0	A0A0E0GN10_ORYNI; Uncharacterized protein
TrEMBL	B8BGR5	0.0	B8BGR5_ORYSI; Uncharacterized protein
STRING	ONIVA03G20120.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-46	cycling DOF factor 2