PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031911-PA
Common NameOsI_33602
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 476aa    MW: 50786.9 Da    PI: 7.8162
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031911-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05106128123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F r  nL+ H r H
  BGIOSGA031911-PA 106 FVCEVCNKGFQRDQNLQLHRRGH 128
                       89*******************88 PP
2zf-C2H2130.00031191213123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cgk++  +s+ k H +++
  BGIOSGA031911-PA 191 WRCERCGKRYAVHSDWKAHVKNC 213
                       58******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-5105128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-7105128No hitNo description
PfamPF128740.0017106128No hitNo description
PROSITE profilePS5015710.97106128IPR007087Zinc finger, C2H2
SMARTSM003550.021106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SMARTSM0035589156186IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-4179211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-7186211No hitNo description
SMARTSM0035599191211IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MLLSDLSSDQ EATGSNSHGG GGGGDRMVVG SHGAAHVVLS NLFLPPAAAA AATMLLPAAP  60
VMVRPAAMAA AQEPRAKKKR SLPGNPDPEA EVIALSPRAL VATNRFVCEV CNKGFQRDQN  120
LQLHRRGHNL PWKLRHRAAA VSAVTTAAPA PRKRVYVCPE PTCVHHDPAR ALGDLTGIKK  180
HFSRKHGEKR WRCERCGKRY AVHSDWKAHV KNCGTREYRC DCGILFSRKD SLLTHRAFCD  240
ALAEESARLL AAANNSSSIT TTTCNNSNIS SNNNNNNINS ISNSNNLLIT SSSSSPPLFL  300
PFSTTPAENP NPNQLLFLQQ HQAAHHQLLL PQFQQPPSSP PAYFDHLAFG GGGGVITSSS  360
CNDDNSSIAG DVMVAAGGDS VSFGLTSEGS VTMHAGDVGR RRLTRDFLGV DHDAGEVDEL  420
ELDELPADLS TTAAACQGCN FAAATTVACC ATDFTTGSRQ YLGRLPPVNE TWSHNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32187256372Zinc finger protein JACKDAW
5b3h_F1e-32187256372Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.632820.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2000963920.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (By similarity). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (By similarity). Seems to repress FTL11 expression (By similarity). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (By similarity). {ECO:0000250|UniProtKB:B1B534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00673SELEXTransfer from GRMZM2G011357Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3591960.0AB359196.1 Oryza sativa Japonica Group Ehd2 mRNA for early heading date 2, complete cds, cultivar: Tohoku IL9.
GenBankFJ0095780.0FJ009578.1 Oryza sativa Japonica Group cultivar Zhonghua 11 Cys2/His2-type zinc finger transcription factor (RID1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614407.10.0protein indeterminate-domain 12
SwissprotB8BGV50.0EHD2_ORYSI; Protein EARLY HEADING DATE 2
TrEMBLI1QUJ70.0I1QUJ7_ORYGL; Uncharacterized protein
STRINGORGLA10G0088000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130962832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.14e-90C2H2 family protein