PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031841-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family E2F/DP
Protein Properties Length: 346aa    MW: 36898.8 Da    PI: 6.413
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031841-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.83.2e-2794180371
           E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  BGIOSGA031841-PA  94 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnfaspdpdnpntpqfDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 180
                       689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.0E-1281346IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.7E-4488186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-3792180IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.9E-2495180IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.85E-2095181IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.65E-40185288IPR014889Transcription factor DP, C-terminal
SMARTSM011384.5E-69187344IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.28E-41187318No hitNo description
PfamPF087811.8E-39188315IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVSGAAHSAS TSGGGGGSEG SPTGRAAPGM QGGGSAATPA ASASASTPAS ETTVARRLDG  60
LDIQGDDAPS SQPATSKKKK RGPGTRATGP DKGGRGLRQF SMKVCEKVES KGRTTYNEVA  120
DELVAEFADP NNNFASPDPD NPNTPQFDEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG  180
LPRTSMSDVE ELKTEIIGLK GRIDKKNAYL QELEDQFVGL QNLAQRNEQL YGSGNAPSGG  240
VALPFILVQT RPHATVEVEI SEDMQLVHFD FNSTPFELHD DSFVLKALGF SGKEPDDTQA  300
RVGNGGECST TPIYHQSPQV ARXNGVRLPT SPPIPGILKG RVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-3686185193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.467880.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567644240.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245510.0AY224551.1 Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614876.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-132DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0E0BAZ10.0A0A0E0BAZ1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0ISI90.0A0A0E0ISI9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QZL80.0A0A0E0QZL8_ORYRU; Uncharacterized protein
STRINGOGLUM10G11120.10.0(Oryza glumipatula)
STRINGORUFI10G11860.10.0(Oryza rufipogon)
STRINGONIVA10G10530.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-132Transcription factor DP