PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031750-PA
Common NameEhd1, OsI_33927
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 253aa    MW: 28783.4 Da    PI: 6.7211
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031750-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.36.3e-27110163155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k rl Wt++LH++F+ av++L G++kA+Pk+il +mkvk Lt+e+v+SHLQkYR+
  BGIOSGA031750-PA 110 KSRLTWTTQLHRQFIAAVNHL-GEDKAVPKKILGIMKVKHLTREQVASHLQKYRM 163
                       68*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011013.274139IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23004.2E-8160No hitNo description
SuperFamilySSF521729.66E-7356IPR011006CheY-like superfamily
PROSITE profilePS5129412.203107166IPR017930Myb domain
SuperFamilySSF466891.54E-18109167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-27110167IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-24110163IPR006447Myb domain, plants
PfamPF002492.7E-7112162IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MASSGDTNTV MKYVANGAFD FLLKPVRIEE LSNIWQHIFR KQMQDHKNNN MVGNLEKPGH  60
PPSTLAMARA TPATTRSTAT EASLAPLENE VRDDMVNYNG EITDIRDLGK SRLTWTTQLH  120
RQFIAAVNHL GEDKAVPKKI LGIMKVKHLT REQVASHLQK YRMQLKKSIP TTSKQGATLS  180
STALDKTQDH PSRSQYFNQD GCMEIMDYSL PRDDLSSGSE CMLEELNDYS SEGFQDFRWD  240
SDKQEYGPCF WNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-18110167562ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4021590.0JN402159.1 Oryza rufipogon x Oryza sativa isolate H3 B-type response regulator (Ehd1) gene, partial cds.
GenBankJN5943320.0JN594332.1 Oryza sativa Indica Group isolate CI-TW06 Ehd1 (Ehd1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876814.10.0two-component response regulator ORR30
SwissprotQ7Y0W30.0EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLB8BHC10.0B8BHC1_ORYSI; Ehd1
STRINGORUFI10G13160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-31response regulator 2
Publications ? help Back to Top
  1. Huang CL, et al.
    Footprints of natural and artificial selection for photoperiod pathway genes in Oryza.
    Plant J., 2012. 70(5): p. 769-82
    [PMID:22268451]