PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031688-PA
Common NameOsI_34037
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 280aa    MW: 30550.2 Da    PI: 8.0032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031688-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181865148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd++lv +++++G ++W++ ++  g+ R++k+c++rw +yl
  BGIOSGA031688-PA 18 RGAWSPEEDDRLVAYIRRHGHPNWRALPKQAGLLRCGKSCRLRWINYL 65
                      89******************************99************97 PP

2Myb_DNA-binding53.36.4e-1771116148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T++E++l+v++++ lG++ W++Ia+ m+ gRt++++k+ w+++l
  BGIOSGA031688-PA  71 RGNFTADEEDLIVRLHNSLGNR-WSAIAAQMP-GRTDNEIKNVWHTHL 116
                       89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-241068IPR009057Homeodomain-like
PROSITE profilePS5129417.0911365IPR017930Myb domain
SuperFamilySSF466893.37E-2915112IPR009057Homeodomain-like
SMARTSM007177.1E-131767IPR001005SANT/Myb domain
PfamPF002497.1E-161865IPR001005SANT/Myb domain
CDDcd001673.09E-102065No hitNo description
PROSITE profilePS5129424.60766120IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-2669120IPR009057Homeodomain-like
SMARTSM007172.6E-1470118IPR001005SANT/Myb domain
PfamPF002493.5E-1571116IPR001005SANT/Myb domain
CDDcd001672.73E-1073116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MYSSPTKAPF CEKEGLRRGA WSPEEDDRLV AYIRRHGHPN WRALPKQAGL LRCGKSCRLR  60
WINYLRPDIK RGNFTADEED LIVRLHNSLG NRWSAIAAQM PGRTDNEIKN VWHTHLKKRL  120
DDERKLAAAG GGGGRRPQTR KQPKAAKSAA AVKREATPSV SVDTSSGVTC STVTESSPSS  180
ADGDHRRQQQ QTQHAAVKEE SFSSGGELPA AAAAPTAAAD MDESFWSSTE VTGMMAGLGD  240
MDEELAIAGT SSAAAARSDD MEFWLKMLLE SGDMRDLAVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25161215109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.33870.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166364120.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347440.0CT834744.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107G14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612956.10.0transcription factor MYB4-like
TrEMBLA2Z8K00.0A2Z8K0_ORYSI; Uncharacterized protein
STRINGOS10T0478300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-70myb domain protein 15