PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA031494-PA | ||||||||
Common Name | OsI_34463 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 587aa MW: 62942.2 Da PI: 6.9728 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8.3e-09 | 344 | 381 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV +WF N R + BGIOSGA031494-PA 344 FEHflHPYPSDVDKHILARQTGLSRSQVANWFINARVR 381 664459******************************88 PP | |||||||
2 | BELL | 93.7 | 1.7e-30 | 207 | 277 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +elq+ k kL ++leeVd+rY++y+eq++++++sFeavag +a+ Yt+lA+++iSrhFr+L+d ++ q+ BGIOSGA031494-PA 207 AAELQRLKGKLYTMLEEVDRRYRRYCEQMRALAASFEAVAGERAAAAYTRLASRTISRHFRSLRDGVVAQL 277 5799****************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.9E-44 | 140 | 275 | IPR006563 | POX domain |
Pfam | PF07526 | 1.7E-42 | 146 | 273 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 322 | 385 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-9 | 325 | 389 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.92E-12 | 325 | 386 | No hit | No description |
SuperFamily | SSF46689 | 3.85E-17 | 326 | 392 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 328 | 391 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.2E-17 | 342 | 381 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MAHDPSLGYA DYFAAEVDGA GATELYGLQQ HQQGVGVAEM FGVRGLMPAA HAHEQSKGVG 60 ALVVGGGGVD DGGATTLPTV HFGGLGELHH HQHRQSQAPL SLSLHRPEAA ATSLLMQQQQ 120 QHLHHQPSPP AGAASTWQLQ QGAWHLRGSR FLLPTQQLLQ EFCSLPVKST TSPSSASKAT 180 KPPQEEAASG GGSSSWTAPT QIQSMDAAEL QRLKGKLYTM LEEVDRRYRR YCEQMRALAA 240 SFEAVAGERA AAAYTRLASR TISRHFRSLR DGVVAQLQAV RKQLGEKDTA VPGMTKGETP 300 RLRVLDQCLR QHKAYQAGML ESHPWRPQRG LPERAVSILR AWLFEHFLHP YPSDVDKHIL 360 ARQTGLSRSQ VANWFINARV RLWKPMVEEM YAEEMKDEEG SGQSTQASNP QNPNPSSYTS 420 EVRGGGGGGV EDRGEQKPSR AQLLHDAGSL ASVVSIGHGG AGRTMVDHHH HQSLNFGMMD 480 QLDFDAYEAA GGGQGFGAGG GVSLTLGLQQ QHADPHDGVN VAFAAAAAPP NSSGVAAEYL 540 FMGGGEHQQQ LPQTAQFGAV MEGDAASHYR GLSATAAGFH LLHDLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 331 | 388 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 331 | 388 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.17301 | 0.0 | flower| leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978047 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068029 | 0.0 | AK068029.1 Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614125.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
TrEMBL | B8BI09 | 0.0 | B8BI09_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI10G17910.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-73 | BEL1-like homeodomain 2 |