PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA031001-PA

Common Name

OsI_31828

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 442aa MW: 46775.6 Da PI: 6.7049

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA031001-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	273	292	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ BGIOSGA031001-PA 273 FSCPVCFKTFNRYNNMQMHM 292 89*****************9 PP
2	zf-C2H2	12.4	0.00046	359	379	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ BGIOSGA031001-PA 359 CRKCGKAFAVKGDWRTHEKNC 379 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.64	273	300	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.6E-6	273	292	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.38	273	295	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	275	295	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.19E-6	339	377	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.7E-5	344	377	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.621	357	377	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	357	377	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	220	383	406	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MENPYYASFL KNHHRRYCFS TPPSPSPSPA GAYSSSSFPF FPTAGVTSTT AATPPTTTAP 60 PSPPLREALP LLSLTPASRG GTTAAQERAR QRGEEDCTDD DDGAEEEGAD EEDVPSSTPG 120 GGGGGGGDRH HQLRRRRAGR LFADLNTKAA AGDPMDVEGS GSGCCAAEAA AAGDDDADVT 180 VALHIGLPSP TAAADLISGL SSAAGRRSST ARRDEEEDEA EEAGGASRDD GDGGDAADAA 240 APLGFASTPI GRLNKGQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HMWGHGSQYR 300 KGPESLRGIQ PTAMLRLPCY CCAAGCRNNI DHPRAKPLKD FRTLQTHYKR KHGLKPFLCR 360 KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH ARAFGHGHGA LGGAAALDDD 420 DDGAVSDLDH DSSSTAPAAR SL

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MENPYYASFL KNHHRRYCFS TPPSPSPSPA GAYSSSSFPF FPTAGVTSTT AATPPTTTAP  60
PSPPLREALP LLSLTPASRG GTTAAQERAR QRGEEDCTDD DDGAEEEGAD EEDVPSSTPG  120
GGGGGGGDRH HQLRRRRAGR LFADLNTKAA AGDPMDVEGS GSGCCAAEAA AAGDDDADVT  180
VALHIGLPSP TAAADLISGL SSAAGRRSST ARRDEEEDEA EEAGGASRDD GDGGDAADAA  240
APLGFASTPI GRLNKGQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HMWGHGSQYR  300
KGPESLRGIQ PTAMLRLPCY CCAAGCRNNI DHPRAKPLKD FRTLQTHYKR KHGLKPFLCR  360
KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH ARAFGHGHGA LGGAAALDDD  420
DDGAVSDLDH DSSSTAPAAR SL

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37989399	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF626940	0.0	EF626940.1 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611033.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-124	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A2Z2J0	0.0	A2Z2J0_ORYSI; Uncharacterized protein
STRING	ONIVA09G15100.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-107	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]