PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030958-PA
Common NameOsI_31749
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 507aa    MW: 54529.2 Da    PI: 7.6535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030958-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.6e-18222271255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  BGIOSGA030958-PA 222 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 271
                       889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-19217288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-16218275No hitNo description
Gene3DG3DSA:4.10.280.105.0E-24218291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.952220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-15222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13226276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPTPAP  60
APPPTSQLQQ QQQQQAFPGG IGTFSISHVA GARPVAAAVV KAEPTPFVLW GQPAAAAAAH  120
PVAALGHHHH HHHHQWTLPF AGVGQVAATA ARQQQERKGR IGGGGFMDSG SRSSGGAGFD  180
DDDGVAARRE VSSSLKELTV RVDGKGGSCS GSGTDQRPSS PRSKHSATEQ RRRSKINDRF  240
QILRELLPHS DQKRDKATFL LEVIEYIRFL QEKVQKFEAS VPEWNQENAK ILPWSNIYFR  300
SFWKNSQSKG QNPGDDLPDP SQFIRNGSSS GYNFTGKPDD NHNMVTSAAA SGAQELVETD  360
HAASVSYRSA ETPTNITNNV TSQAQAQWAS PAGVDDCAMN SEMLNNQQLA IDEGTISLSS  420
QYSQQLLGTL THALESSGVD LSQASISVQI NLGKRAVKRP GADGSSSSKE LPSTSANNEN  480
MGHQLTMLGG GTEELPHPTK RHKSGNS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.167410.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329871050.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713150.0AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence.
GenBankEU8372610.0EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612524.10.0transcription factor BIM3 isoform X1
TrEMBLB8BCR20.0B8BCR2_ORYSI; Uncharacterized protein
STRINGOS09T0475400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-53BES1-interacting Myc-like protein 2