PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA030899-PA

Common Name

OsI_31640

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 364aa MW: 38473.5 Da PI: 9.0403

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA030899-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.6	6.5e-14	285	335	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ Nk+L + + ++ BGIOSGA030899-PA 285 RRQRRMIKNRESAARSRARKQAYTLELEAEVQKLKEMNKELERKQADIMEM 335 79************************************9998765555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-11	281	346	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.657	283	334	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.9E-13	285	333	No hit	No description
Pfam	PF00170	1.0E-11	285	335	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.19E-10	285	333	No hit	No description
CDD	cd14707	6.49E-23	285	337	No hit	No description
PROSITE pattern	PS00036	0	288	303	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MEFGNGGSSS SERRAAAEGA TLARQGSVYS LTFDEFQSAL AGGGGGGGGG SGFGKDFGSM 60 NMDELLRSIW TAEESQAMAS ASGSAAGVGV AVGAPPTSLQ RQGSLTLPRT LSAKTVDEVW 120 RNLVRDEPPP VGAADGGDMP PQRQSTLGEM TLEEFLVRAG VVRENPPAAP PPVPPPMPPR 180 PVPVVPKTTA FLGNFPGAND AGAAGLGFAP LGMGDPALGN GLMPRAVPVG LPGAAVAMQT 240 AVNQFDSGDK GNSDLSSPTE PMPYSFEGLV RGRRNGGGVE KVVERRQRRM IKNRESAARS 300 RARKQAYTLE LEAEVQKLKE MNKELERKQA DIMEMQKNEV EEMIKDPFGR RKRLCLRRTL 360 TGPW

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MEFGNGGSSS SERRAAAEGA TLARQGSVYS LTFDEFQSAL AGGGGGGGGG SGFGKDFGSM  60
NMDELLRSIW TAEESQAMAS ASGSAAGVGV AVGAPPTSLQ RQGSLTLPRT LSAKTVDEVW  120
RNLVRDEPPP VGAADGGDMP PQRQSTLGEM TLEEFLVRAG VVRENPPAAP PPVPPPMPPR  180
PVPVVPKTTA FLGNFPGAND AGAAGLGFAP LGMGDPALGN GLMPRAVPVG LPGAAVAMQT  240
AVNQFDSGDK GNSDLSSPTE PMPYSFEGLV RGRRNGGGVE KVVERRQRRM IKNRESAARS  300
RARKQAYTLE LEAEVQKLKE MNKELERKQA DIMEMQKNEV EEMIKDPFGR RKRLCLRRTL  360
TGPW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.102968	0.0	callus\| leaf\| panicle\| stem\| vegetative meristem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32975891	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269\|PubMed:10611387}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065873	0.0	AK065873.1 Oryza sativa Japonica Group cDNA clone:J013049N23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612550.1	0.0	bZIP transcription factor TRAB1-like
Swissprot	Q6ZDF3	1e-119	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	B8BCK8	0.0	B8BCK8_ORYSI; Uncharacterized protein
STRING	OS09T0456200-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.3	3e-33	ABRE binding factor 4

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]